(Q42070485)

16 October 2017

The folding of the hairpin ribozyme: dependence on the loops and the junction (English)

1 reference

16 October 2017

0 references

Z Y Zhao

1

1 reference

16 October 2017

T J Wilson

series ordinal

2

1 reference

16 October 2017

K Maxwell

series ordinal

3

1 reference

16 October 2017

D M Lilley

series ordinal

4

1 reference

16 October 2017

language of work or name

English

0 references

publication date

1 December 2000

1 reference

16 October 2017

1 reference

16 October 2017

6

1 reference

16 October 2017

12

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16 October 2017

1833-1846

1 reference

Investigation of the proposed interdomain ribose zipper in hairpin ribozyme cleavage using 2'-modified nucleosides

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Structure and function of the hairpin ribozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Determination of metal ion binding sites within the hairpin ribozyme domains by NMR.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Tertiary structure stabilization promotes hairpin ribozyme ligation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Structure, folding and catalysis of the small nucleolytic ribozymes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Solution structure of the loop B domain from the hairpin ribozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Crystal structure of an 82-nucleotide RNA-DNA complex formed by the 10-23 DNA enzyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

In vitro selection of hammerhead ribozymes containing a bulged nucleotide in stem II.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

The loop B domain is physically separable from the loop A domain in the hairpin ribozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Reconstitution of hairpin ribozyme activity following separation of functional domains

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Uranyl photoprobing of a four-way DNA junction: evidence for specific metal ion binding

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Mutagenesis of the hairpin ribozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Kinking of DNA and RNA by base bulges

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

RNA catalytic properties of the minimum (-)sTRSV sequence

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Human hepatitis delta virus RNA subfragments contain an autocleavage activity

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Two sequences participating in the autolytic processing of satellite tobacco ringspot virus complementary RNA

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

'Hairpin' catalytic RNA model: evidence for helices and sequence requirement for substrate RNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Effects of phosphorothioate and 2-amino groups in hammerhead ribozymes on cleavage rates and Mg2+ binding

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Fluorescence resonance energy transfer and nucleic acids

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

The influence of junction conformation on RNA cleavage by the hairpin ribozyme in its natural junction form

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Exchange between stacking conformers in a four-Way DNA junction.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Catalytic properties of hairpin ribozymes derived from Chicory yellow mottle virus and arabis mosaic virus satellite RNAs

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Simple RNA enzymes with new and highly specific endoribonuclease activities

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370052

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies

17 August 2018

1 reference

12 December 2020

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

1 reference

12 December 2020

The global folding of four-way helical junctions in RNA, including that in U1 snRNA

1 reference

12 December 2020

Enhanced folding of hairpin ribozymes with replaced domains

1 reference

12 December 2020

Analysis of hairpin ribozyme base mutations in loops 2 and 4 and their effects on cis-cleavage in vitro

1 reference

12 December 2020

Construction of hairpin ribozymes with a three-way junction

1 reference

12 December 2020

A new type of hairpin ribozyme consisting of three domains

1 reference

12 December 2020

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme

1 reference

12 December 2020

Mutational analysis of loops 1 and 5 of the hairpin ribozyme

1 reference

12 December 2020

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

12 December 2020

Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions

1 reference

12 December 2020

Folding of the four-way RNA junction of the hairpin ribozyme

1 reference

12 December 2020

The role of essential pyrimidines in the hairpin ribozyme-catalysed reaction

1 reference

12 December 2020

Novel guanosine requirement for catalysis by the hairpin ribozyme

1 reference

12 December 2020

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

1 reference

12 December 2020

Four ribose 2'-hydroxyl groups essential for catalytic function of the hairpin ribozyme

1 reference

12 December 2020

Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA

1 reference

12 December 2020

Structural basis for the guanosine requirement of the hairpin ribozyme

1 reference

12 December 2020

A small catalytic oligoribonucleotide

1 reference

12 December 2020

10.1017/S1355838200001230

Identifiers

DOI

1 reference

16 October 2017

1 reference

16 October 2017

PubMed publication ID

11142382

1 reference