(Q28297873)

English

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24003028%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure (English)

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Europe PubMed Central

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15 February 2020

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inferred from title

Krishna C Suddala

1

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15 February 2020

10

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15 February 2020

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Arlie J Rinaldi

2

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15 February 2020

Jun Feng

3

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15 February 2020

Anthony M Mustoe

4

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15 February 2020

Catherine D Eichhorn

5

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15 February 2020

Joseph A Liberman

6

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15 February 2020

Joseph E Wedekind

7

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15 February 2020

Hashim M Al-Hashimi

8

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15 February 2020

Charles L Brooks

9

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15 February 2020

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3 September 2013

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15 February 2020

Nucleic Acids Research

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15 February 2020

41

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15 February 2020

22

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15 February 2020

10462-10475

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15 February 2020

copyright license

Creative Commons Attribution 3.0 Unported

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Molecular robots guided by prescriptive landscapes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

CHARMM: the biomolecular simulation program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

The distributions, mechanisms, and structures of metabolite-binding riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Structure and mechanism of a metal-sensing regulatory RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

GROMACS: fast, flexible, and free

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Control of gene expression by a natural metabolite-responsive ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Adenine riboswitches and gene activation by disruption of a transcription terminator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Improvement of reading frame maintenance is a common function for several tRNA modifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Queuosine modification of the wobble base in tRNAHis influences 'in vivo' decoding properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Biosynthesis of the modified nucleoside Q in transfer RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Structure determination of a nucleoside Q precursor isolated from E. coli tRNA: 7-{aminomethyl)-7-deazaguanosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Prospects for riboswitch discovery and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

20 March 2017

Regulation of bacterial gene expression by riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

7 April 2017

Gene regulation by riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

7 April 2017

Conformational dynamics of single pre-mRNA molecules during in vitro splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

24 May 2017

RecA filament sliding on DNA facilitates homology search

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Computational study of unfolding and regulation mechanism of preQ1 riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Atomic-scale characterization of conformational changes in the preQ₁ riboswitch aptamer upon ligand binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Comparison of solution and crystal structures of preQ1 riboswitch reveals calcium-induced changes in conformation and dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

Cooperative and directional folding of the preQ1 riboswitch aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

29 September 2017

What lessons can be learned from studying the folding of homologous proteins?

1 reference

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Folding of a transcriptionally acting preQ1 riboswitch

1 reference

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Leakage and slow allostery limit performance of single drug-sensing aptazyme molecules based on the hammerhead ribozyme.

1 reference

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29 September 2017

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

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Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis.

1 reference

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A practical guide to single-molecule FRET

1 reference

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Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.

1 reference

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Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance

1 reference

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MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.

1 reference

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The riboswitch control of bacterial metabolism

1 reference

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Analysis of RNA motifs

1 reference

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29 September 2017

Correlating structural dynamics and function in single ribozyme molecules

1 reference

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A complete sequence of the T. tengcongensis genome

1 reference

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1 reference

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29 September 2017

Possible anticodon sequences of tRNAHis, tRNAAsn, and tRNAAsp from Escherichia coli. Universal presence of nucleoside O in the first position of the anticodons of these transfer ribonucleic acid

1 reference

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29 September 2017

Molecular mechanism of preQ1 riboswitch action: a molecular dynamics study

1 reference

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1 reference

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1 reference

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1 reference

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2 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905878

2 June 2018

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1 reference

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RNA structure alignment by a unit-vector approach

1 reference

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Antibacterial lysine analogs that target lysine riboswitches.

1 reference

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27 November 2018

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1 reference

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1 reference

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27 November 2018

Evidence for Pseudoknot Formation of Class I preQ1Riboswitch Aptamers

1 reference

https://pubmed.ncbi.nlm.nih.gov/24003028

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pseudoknot preorganization of the preQ1 class I riboswitch

1 reference

https://pubmed.ncbi.nlm.nih.gov/24003028

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Wild-type tRNATyrG reads the TMV RNA stop codon, but Q base-modified tRNATyrQ does not.

1 reference

https://pubmed.ncbi.nlm.nih.gov/24003028

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT798

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24003028%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24003028%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24003028%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

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