(Q28394129)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Witold Kot

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Musemma K Muhammed

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Horst Neve

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Charles M A P Franz

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Lars H Hansen

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Finn K Vogensen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Dennis S Nielsen

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

language of work or name

English

0 references

publication date

17 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

issue

1

0 references

page(s)

64

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

29 February 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4650499/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Detection of airborne lactococcal bacteriophages in cheese plants

19 March 2017

1 reference

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QIIME allows analysis of high-throughput community sequencing data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

RNA viral community in human feces: prevalence of plant pathogenic viruses

19 March 2017

1 reference

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19 March 2017

Bacteriophage T4 Genome

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

19 March 2017

1 reference

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Search and clustering orders of magnitude faster than BLAST

7 April 2017

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Functional interactions between the gut microbiota and host metabolism

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Disease-specific alterations in the enteric virome in inflammatory bowel disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Characterization of virus-like particles associated with the human faecal and caecal microbiota

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Beyond genetics. Influence of dietary factors and gut microbiota on type 1 diabetes

29 September 2017

1 reference

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Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Classification and quantification of bacteriophage taxa in human gut metagenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Kraken: ultrafast metagenomic sequence classification using exact alignments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Rapid evolution of the human gut virome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Study of the viral and microbial communities associated with Crohn's disease: a metagenomic approach.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Bacteriophage adhering to mucus provide a non-host-derived immunity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Conservation of gene cassettes among diverse viruses of the human gut.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Simultaneous identification of DNA and RNA viruses present in pig faeces using process-controlled deep sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Assessing the diversity and specificity of two freshwater viral communities through metagenomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Diversity and abundance of single-stranded DNA viruses in human feces.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

The human gut virome: inter-individual variation and dynamic response to diet

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Interactions between gut microbiota and host metabolism predisposing to obesity and diabetes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Viruses in the faecal microbiota of monozygotic twins and their mothers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Laboratory procedures to generate viral metagenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Viral diversity and dynamics in an infant gut.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Phage-host interaction: an ecological perspective

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Metagenomic analyses of an uncultured viral community from human feces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

29 September 2017

Phi29 family of phages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Sequencing and analysis of the prolate-headed lactococcal bacteriophage c2 genome and identification of the structural genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Amplification and purification of T4-like escherichia coli phages for phage therapy: from laboratory to pilot scale

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

Local adaptation of bacteriophages to their bacterial hosts in soil

2 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0131-4

Evaluation of commercial kits for the extraction and purification of viral nucleic acids from environmental and fecal samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0131-4

Discrimination of infectious bacteriophage T4 virus by propidium monoazide real-time PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0131-4

Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0131-4

Dysbiosis in inflammatory bowel disease: a role for bacteriophages?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0131-4

Methods for the isolation of viruses from environmental samples

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4650499

10.1186/S40168-015-0131-4

27 November 2018

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

29 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s40168-015-0131-4

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

26577924

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26577924%20AND%20SRC:MED&resulttype=core&format=json