(Q28476763)

6

object named as

Kuo-Chen Chou

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author name string

Lele Hu

1

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Tao Huang

2

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Xiaohe Shi

3

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Wen-Cong Lu

Creative Commons Attribution 4.0 International

4

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language of work or name

English

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publication date

19 January 2011

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published in

PLOS One

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volume

6

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issue

1

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page(s)

e14556

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copyright license

start time

19 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks

1 reference

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A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0

19 March 2017

1 reference

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Predicting drug-target interaction networks based on functional groups and biological features

19 March 2017

1 reference

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Prediction of pharmacological and xenobiotic responses to drugs based on time course gene expression profiles

19 March 2017

1 reference

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PROSITE, a protein domain database for functional characterization and annotation

19 March 2017

1 reference

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STRING 8--a global view on proteins and their functional interactions in 630 organisms

19 March 2017

1 reference

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A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

19 March 2017

1 reference

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Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Recent progress in protein subcellular location prediction

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Network-based prediction of protein function

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context

19 March 2017

1 reference

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Pfam: clans, web tools and services

19 March 2017

1 reference

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The use of edge-betweenness clustering to investigate biological function in protein interaction networks

19 March 2017

1 reference

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The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

19 March 2017

1 reference

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FATCAT: a web server for flexible structure comparison and structure similarity searching

19 March 2017

1 reference

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Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network

19 March 2017

1 reference

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Predicting function: from genes to genomes and back

19 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

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The IntAct molecular interaction database in 2010

19 March 2017

1 reference

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BioMart--biological queries made easy

19 March 2017

1 reference

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Bayesian Markov Random Field analysis for protein function prediction based on network data

7 April 2017

1 reference

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An overview of in silico protein function prediction.

29 September 2017

1 reference

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The Mouse Genome Database (MGD): mouse biology and model systems

29 September 2017

1 reference

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Identification of enzymes and activity from two-dimensional gel electrophoresis

29 September 2017

1 reference

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Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

29 September 2017

1 reference

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Systems-level analyses identify extensive coupling among gene expression machines

29 September 2017

1 reference

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Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery

29 September 2017

1 reference

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Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Genome-scale protein function prediction in yeast Saccharomyces cerevisiae through integrating multiple sources of high-throughput data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Iterative cluster analysis of protein interaction data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Structural bioinformatics and its impact to biomedical science

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Whole-genome annotation by using evidence integration in functional-linkage networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Prediction of protein function using protein-protein interaction data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Predicting protein function from protein/protein interaction data: a probabilistic approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

On ontologies for biologists: the Gene Ontology--untangling the web.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

The SBASE protein domain library, release 9.0: an online resource for protein domain identification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Prediction of protein cellular attributes using pseudo-amino acid composition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Protein function in the post-genomic era.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

DIP: the database of interacting proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

DNA secondary structure: a common and causative factor for expansion in human disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Seventy-five percent accuracy in protein secondary structure prediction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Prediction of Protein Structural Classes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

The classification and origins of protein folding patterns

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Recognition of a protein fold in the context of the Structural Classification of Proteins (SCOP) classification

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Human pancreatic thread protein, an exocrine thread protein with possible implications to Alzheimer's disease: secondary structure in solution at acid pH.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Predicting functions from protein sequences--where are the bottlenecks?

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023709

Molecular function prediction using neighborhood features

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014556

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014556

Comparative study of topological indices of macro/supramolecular RNA complex networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014556

A novel computational approach to predict transcription factor DNA binding preference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014556

Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014556

A model for structure-dependent binding of Congo red to Alzheimer beta-amyloid fibrils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014556

Predicting protein fold pattern with functional domain and sequential evolution information

21 January 2018

1 reference

12 December 2020

Prediction of protein functions based on function-function correlation relations

1 reference

12 December 2020

Correlation of the amino acid composition of a protein to its structural and biological characters

1 reference

12 December 2020

The folding type of a protein is relevant to the amino acid composition

1 reference

12 December 2020

Secondary structure of amyloid beta peptide correlates with neurotoxic activity in vitro

1 reference

12 December 2020

PredAcc: prediction of solvent accessibility

1 reference

12 December 2020

CFinder: locating cliques and overlapping modules in biological networks

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0014556

Identifiers

DOI

1 reference

ADS bibcode

2011PLoSO...614556H

0 references

1 reference

1 reference

PubMed publication ID

21283518

1 reference