(Q28480452)

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Novel approach to meta-analysis of microarray datasets reveals muscle remodeling-related drug targets and biomarkers in Duchenne muscular dystrophy

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Novel approach to meta-analysis of microarray datasets reveals muscle remodeling-related drug targets and biomarkers in Duchenne muscular dystrophy (English)

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Duchenne muscular dystrophy

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Ekaterina Kotelnikova

object named as

Ekaterina Kotelnikova

1

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Mikhail Pyatnitskiy

object named as

Mikhail A Pyatnitskiy

3

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author name string

Maria A Shkrob

2

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Alessandra Ferlini

4

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Nikolai Daraselia

5

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publication date

February 2012

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PLOS Computational Biology

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8

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2

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e1002365

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Creative Commons Attribution 4.0 International

2 February 2012

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April 2022 Public Data File from Crossref

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limma

Limma

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3271016

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

ConsensusPathDB: toward a more complete picture of cell biology

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19 March 2017

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19 March 2017

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19 March 2017

Transducer of regulated CREB-binding proteins (TORCs) induce PGC-1alpha transcription and mitochondrial biogenesis in muscle cells

1 reference

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19 March 2017

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

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19 March 2017

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle

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19 March 2017

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19 March 2017

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19 March 2017

Mechanisms controlling mitochondrial biogenesis and respiration through the thermogenic coactivator PGC-1

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19 March 2017

The kinase LKB1 mediates glucose homeostasis in liver and therapeutic effects of metformin

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19 March 2017

The CREB coactivator TORC2 is a key regulator of fasting glucose metabolism

1 reference

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19 March 2017

Network-based classification of breast cancer metastasis

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7 April 2017

Discovering regulatory and signalling circuits in molecular interaction networks

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7 April 2017

AMP-activated protein kinase (AMPK) action in skeletal muscle via direct phosphorylation of PGC-1alpha

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7 April 2017

Dystrophin: the protein product of the Duchenne muscular dystrophy locus

1 reference

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7 April 2017

Chronic AMPK activation evokes the slow, oxidative myogenic program and triggers beneficial adaptations in mdx mouse skeletal muscle

1 reference

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29 September 2017

Resveratrol ameliorates muscular pathology in the dystrophic mdx mouse, a model for Duchenne muscular dystrophy.

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29 September 2017

Estrogen-related receptor α regulates skeletal myocyte differentiation via modulation of the ERK MAP kinase pathway

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29 September 2017

Histone deacetylase inhibitors in the treatment of muscular dystrophies: epigenetic drugs for genetic diseases.

1 reference

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29 September 2017

Losartan decreases cardiac muscle fibrosis and improves cardiac function in dystrophin-deficient mdx mice

1 reference

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29 September 2017

CTCF promotes muscle differentiation by modulating the activity of myogenic regulatory factors

1 reference

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29 September 2017

Myogenin regulates exercise capacity but is dispensable for skeletal muscle regeneration in adult mdx mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Markers of degeneration and regeneration in Duchenne muscular dystrophy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Pharmacological activation of PPARbeta/delta stimulates utrophin A expression in skeletal muscle fibers and restores sarcolemmal integrity in mature mdx mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Stability and aggregation of ranked gene lists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways

1 reference

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29 September 2017

Master regulators used as breast cancer metastasis classifier.

1 reference

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29 September 2017

The value of mammalian models for duchenne muscular dystrophy in developing therapeutic strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

AMP-activated protein kinase-regulated activation of the PGC-1alpha promoter in skeletal muscle cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

ExPlain: finding upstream drug targets in disease gene regulatory networks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Endogenous interferon-gamma is required for efficient skeletal muscle regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Protein-DNA array-based identification of transcription factor activities differentially regulated in skeletal muscle of normal and dystrophin-deficient mdx mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Animal models for genetic neuromuscular diseases

1 reference

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29 September 2017

Molecular networks in microarray analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

PGC-1alpha regulates the neuromuscular junction program and ameliorates Duchenne muscular dystrophy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Interplay of IKK/NF-kappaB signaling in macrophages and myofibers promotes muscle degeneration in Duchenne muscular dystrophy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Angiotensin II type 1 receptor blockade attenuates TGF-beta-induced failure of muscle regeneration in multiple myopathic states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Recent advances in respiratory care for neuromuscular disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Dystrophin, its interactions with other proteins, and implications for muscular dystrophy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Signaling pathways in skeletal muscle remodeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

The role of AMP-activated protein kinase in mitochondrial biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Evolving therapeutic strategies for Duchenne muscular dystrophy: targeting downstream events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Tumor necrosis factor-alpha inhibits myogenic differentiation through MyoD protein destabilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Regulation of peroxisome proliferator-activated receptor gamma coactivator 1 alpha (PGC-1 alpha ) and mitochondrial function by MEF2 and HDAC5

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Expression profiling in the muscular dystrophies: identification of novel aspects of molecular pathophysiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Independent repressor domains in ZEB regulate muscle and T-cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Duchenne muscular dystrophy: Pathogenetic aspects and genetic prevention

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Isolation of candidate cDNAs for portions of the Duchenne muscular dystrophy gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Complete cloning of the duchenne muscular dystrophy (DMD) cDNA and preliminary genomic organization of the DMD gene in normal and affected individuals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

29 September 2017

Inhibition of the IKK/NF-κB pathway by AAV gene transfer improves muscle regeneration in older mdx mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

2 June 2018

Connective tissue growth factor is overexpressed in muscles of human muscular dystrophy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

2 June 2018

Impact of nasal ventilation on survival in hypercapnic Duchenne muscular dystrophy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

2 June 2018

Fast muscle fibers are preferentially affected in Duchenne muscular dystrophy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

2 June 2018

Distinctive patterns of basic fibroblast growth factor (bFGF) distribution in degenerating and regenerating areas of dystrophic (mdx) striated muscles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

2 June 2018

Computational approaches for drug repositioning and combination therapy design.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Size and composition of the calf and quadriceps muscles in Duchenne muscular dystrophy. A tomographic and histochemical study

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Long-term benefits of deflazacort treatment for boys with Duchenne muscular dystrophy in their second decade.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Activation of nuclear factor-kappaB in inflammatory myopathies and Duchenne muscular dystrophy

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Nuclear factor kappa-B blockade reduces skeletal muscle degeneration and enhances muscle function in Mdx mice

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Intramuscular renin-angiotensin system is activated in human muscular dystrophy.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Transforming growth factor-beta-induced inhibition of myogenesis is mediated through Smad pathway and is modulated by microtubule dynamic stability

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Perindopril preventive treatment on mortality in Duchenne muscular dystrophy: 10 years' follow-up

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Prevention of muscle fibrosis and myonecrosis in mdx mice by suramin, a TGF-β1 blocker.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Increased connective tissue growth factor associated with cardiac fibrosis in the mdx mouse model of dystrophic cardiomyopathy.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Runx1 prevents wasting, myofibrillar disorganization, and autophagy of skeletal muscle

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Quantitative proteomic analysis of dystrophic dog muscle.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Gene expression profiling in the early phases of DMD: a constant molecular signature characterizes DMD muscle from early postnatal life throughout disease progression

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002365

21 January 2018

Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

27 November 2018

Impaired regeneration of dystrophin-deficient muscle fibers is caused by exhaustion of myogenic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

27 November 2018

Muscle fiber type specificity in insulin signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3271016

27 November 2018

Increased expression of utrophin in a slow vs. a fast muscle involves posttranscriptional events

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Myocyte enhancer factor 2C and myogenin up-regulate each other's expression and induce the development of skeletal muscle in P19 cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Myogenic basic helix-loop-helix proteins regulate the expression of peroxisomal proliferator activated receptor-gamma coactivator-1alpha

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gamma interferon as an antifibrosis agent in skeletal muscle

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Basic fibroblast growth factor promotes in vivo muscle regeneration in murine muscular dystrophy

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MyoD is required for myogenic stem cell function in adult skeletal muscle

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fibrogenic cytokines and extent of fibrosis in muscle of dogs with X-linked golden retriever muscular dystrophy

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Early onset of inflammation and later involvement of TGFbeta in Duchenne muscular dystrophy

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elevated basic fibroblast growth factor in the serum of patients with Duchenne muscular dystrophy

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resolution of skeletal muscle inflammation in mdx dystrophic mouse is accompanied by increased immunoglobulin and interferon-gamma production

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elevated plasma levels of transforming growth factor beta1 in patients with muscular dystrophy

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319435

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PCBI.1002365

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journals/ploscb/KotelnikovaSPFD12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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