(Q28480501)

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Identifying biological network structure, predicting network behavior, and classifying network state with High Dimensional Model Representation (HDMR)

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scholarly article

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Identifying biological network structure, predicting network behavior, and classifying network state with High Dimensional Model Representation (HDMR) (English)

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Miles A Miller

1

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Herschel A Rabitz

4

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Herschel A Rabitz

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Xiao-Jiang Feng

2

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Genyuan Li

3

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2012

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7

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e37664

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6

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Creative Commons Attribution 4.0 International

18 June 2012

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April 2022 Public Data File from Crossref

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377689

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377689

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0037664

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1 reference

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10.1371/JOURNAL.PONE.0037664

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2012PLoSO...737664M

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