(Q28486142)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592976%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Formation of raft-like assemblies within clusters of influenza hemagglutinin observed by MD simulations (English)

1 reference

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28 February 2020

4

1 reference

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28 February 2020

3

Marc Baaden

1 reference

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28 February 2020

author name string

Daniel L Parton

series ordinal

1

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28 February 2020

Alex Tek

series ordinal

2

1 reference

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28 February 2020

language of work or name

English

0 references

publication date

11 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592976%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

28 February 2020

published in

1 reference

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28 February 2020

volume

9

1 reference

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28 February 2020

issue

4

1 reference

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28 February 2020

page(s)

e1003034

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Creative Commons Attribution 4.0 International

28 February 2020

copyright license

start time

11 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Influenza virus hemagglutinin concentrates in lipid raft microdomains for efficient viral fusion

19 March 2017

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X-ray structure of the hemagglutinin of a potential H3 avian progenitor of the 1968 Hong Kong pandemic influenza virus

19 March 2017

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19 March 2017

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7 April 2017

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Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane

29 September 2017

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29 September 2017

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Cell membranes: the lipid perspective

29 September 2017

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Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching.

29 September 2017

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Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class.

29 September 2017

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Raft domains of variable properties and compositions in plasma membrane vesicles

29 September 2017

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29 September 2017

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Influenza virus assembly and budding

29 September 2017

1 reference

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Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Two conserved residues are important for inducing highly ordered membrane domains by the transmembrane domain of influenza hemagglutinin

29 September 2017

1 reference

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Greasing their way: lipid modifications determine protein association with membrane rafts

29 September 2017

1 reference

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Membrane proteins diffuse as dynamic complexes with lipids.

29 September 2017

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g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation

29 September 2017

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On the role of acylation of transmembrane proteins

29 September 2017

1 reference

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Cholesterol-induced fluid membrane domains: a compendium of lipid-raft ternary phase diagrams

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Peptide nanopores and lipid bilayers: interactions by coarse-grained molecular-dynamics simulations

29 September 2017

1 reference

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The molecular face of lipid rafts in model membranes.

29 September 2017

1 reference

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S acylation of the hemagglutinin of influenza viruses: mass spectrometry reveals site-specific attachment of stearic acid to a transmembrane cysteine.

29 September 2017

1 reference

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Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories

29 September 2017

1 reference

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Influenza virus hemagglutinin and neuraminidase, but not the matrix protein, are required for assembly and budding of plasmid-derived virus-like particles

29 September 2017

1 reference

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Large-scale fluid/fluid phase separation of proteins and lipids in giant plasma membrane vesicles

29 September 2017

1 reference

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Influenza virus pleiomorphy characterized by cryoelectron tomography

29 September 2017

1 reference

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Curvature and hydrophobic forces drive oligomerization and modulate activity of rhodopsin in membranes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Clustering of raft-associated proteins in the external membrane leaflet modulates internal leaflet H-ras diffusion and signaling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Influenza virus hemagglutinin (H3 subtype) requires palmitoylation of its cytoplasmic tail for assembly: M1 proteins of two subtypes differ in their ability to support assembly

29 September 2017

1 reference

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Quantitative electron microscopy and fluorescence spectroscopy of the membrane distribution of influenza hemagglutinin

29 September 2017

1 reference

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Transbilayer peptide sorting between raft and nonraft bilayers: comparisons of detergent extraction and confocal microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Crosslinking a lipid raft component triggers liquid ordered-liquid disordered phase separation in model plasma membranes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

A study of the membrane-water interface region of membrane proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Differently anchored influenza hemagglutinin mutants display distinct interaction dynamics with mutual rafts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Role of cholesterol in lipid raft formation: lessons from lipid model systems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

A functional link between the actin cytoskeleton and lipid rafts during budding of filamentous influenza virions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Role of lipid modifications in targeting proteins to detergent-resistant membrane rafts. Many raft proteins are acylated, while few are prenylated.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Influenza viruses select ordered lipid domains during budding from the plasma membrane

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Interaction of influenza virus haemagglutinin with sphingolipid-cholesterol membrane domains via its transmembrane domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Palmitylation of the influenza virus hemagglutinin (H3) is not essential for virus assembly or infectivity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Differential extractability of influenza virus hemagglutinin during intracellular transport in polarized epithelial cells and nonpolar fibroblasts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Hemagglutinin of influenza virus partitions into the nonraft domain of model membranes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Temperature-dependent phase behavior and protein partitioning in giant plasma membrane vesicles

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Lateral distribution of the transmembrane domain of influenza virus hemagglutinin revealed by time-resolved fluorescence imaging.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Lipid raft disruption by cholesterol depletion enhances influenza A virus budding from MDCK cells

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

Glycosphingolipid-enriched, detergent-insoluble complexes in protein sorting in epithelial cells

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623702

The cytoplasmic tails of the influenza virus spike glycoproteins are required for normal genome packaging

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

FLIM-FRET and FRAP reveal association of influenza virus haemagglutinin with membrane rafts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Exclusion of a Transmembrane-Type Peptide from Ordered-Lipid Domains (Rafts) Detected by Fluorescence Quenching: Extension of Quenching Analysis to Account for the Effects of Domain Size and Domain Boundaries

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

SNAREs prefer liquid-disordered over "raft" (liquid-ordered) domains when reconstituted into giant unilamellar vesicles

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Palmitoylation and intracellular domain interactions both contribute to raft targeting of linker for activation of T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Concerted diffusion of lipids in raft-like membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Role of glycolipids in lipid rafts: a view through atomistic molecular dynamics simulations with galactosylceramide

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Interleaflet interaction and asymmetry in phase separated lipid bilayers: molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Molecular view on protein sorting into liquid-ordered membrane domains mediated by gangliosides and lipid anchors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Visualizing association of N-ras in lipid microdomains: influence of domain structure and interfacial adsorption

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Proteomic analysis of plasma membrane vesicles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Self-association of transmembrane alpha-helices in model membranes: importance of helix orientation and role of hydrophobic mismatch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Influence of hydrophobic mismatch and palmitoylation on the association of transmembrane alpha-helical peptides with detergent-resistant membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: effects on backbone structure, orientation, and extent of membrane incorporation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

PACKMOL: a package for building initial configurations for molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Aggregation and vesiculation of membrane proteins by curvature-mediated interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003034

Transmembrane helices can induce domain formation in crowded model membranes

21 January 2018

1 reference

12 December 2020

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

1 reference

12 December 2020

Domain formation in membranes with quenched protein obstacles: lateral heterogeneity and the connection to universality classes

1 reference

12 December 2020

Reconstitution of membrane proteins into liposomes

1 reference

12 December 2020

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

1 reference

12 December 2020

G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1003034

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592976%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/PartonTBS13

28 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592976%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592976%20AND%20SRC:MED&resulttype=core&format=json