(Q28563954)

English

Genome-scale transcriptional study of hybrid effects and regulatory divergence in an F1 hybrid Ruellia (Wild Petunias: Acanthaceae) and its parents

scientific article (publication date: 17 January 2017)

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scholarly article

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Genome-scale transcriptional study of hybrid effects and regulatory divergence in an F1 hybrid Ruellia (Wild Petunias: Acanthaceae) and its parents (English)

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Acanthaceae

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Erin A Tripp

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

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publication date

17 January 2017

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BMC Plant Biology

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

17

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

15

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

describes a project that uses

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DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

MYB transcription factor genes as regulators for plant responses: an overview

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Molecular mechanisms of polyploidy and hybrid vigor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

BLAST+: architecture and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

GAGE: generally applicable gene set enrichment for pathway analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Hybrid speciation in plants: new insights from molecular studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

19 March 2017

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

ProtTest 3: fast selection of best-fit models of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

Hybrid speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

Hybridization as an invasion of the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

CD-Search: protein domain annotations on the fly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

7 April 2017

Transcriptome analysis and anthocyanin-related genes in red leaf lettuce

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Immediate Genetic and Epigenetic Changes in F1 Hybrids Parented by Species with Divergent Genomes in the Rice Genus (Oryza).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

The effect of polyploidy and hybridization on the evolution of floral colour in Nicotiana (Solanaceae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

De Novo Transcriptome Analysis to Identify Anthocyanin Biosynthesis Genes Responsible for Tissue-Specific Pigmentation in Zoysiagrass (Zoysia japonica Steud.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Comparative transcriptome analysis of genes involved in anthocyanin biosynthesis in the red and yellow fruits of sweet cherry (Prunus avium L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Ecological transition predictably associated with gene degeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Transcriptome sequencing of a chimaera reveals coordinated expression of anthocyanin biosynthetic genes mediating yellow formation in herbaceous peony (Paeonia lactiflora Pall.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

A rich fossil record yields calibrated phylogeny for Acanthaceae (Lamiales) and evidence for marked biases in timing and directionality of intercontinental disjunctions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Flower color as a model system for studies of plant evo-devo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Transgressive Hybrids as Hopeful Monsters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

RNA-seq analysis of allele-specific expression, hybrid effects, and regulatory divergence in hybrids compared with their parents from natural populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Hybridization, speciation and novelty

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Lessons from flower colour evolution on targets of selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Gene loss and parallel evolution contribute to species difference in flower color

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Proteinortho: detection of (co-)orthologs in large-scale analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Protein abundances are more conserved than mRNA abundances across diverse taxa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

MYB transcription factors in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Hybrid floral scent novelty drives pollinator shift in sexually deceptive orchids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Blue flower color development by anthocyanins: from chemical structure to cell physiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Adaptive radiations: from field to genomic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Candidate gene polymorphisms associated with salt tolerance in wild sunflower hybrids: implications for the origin of Helianthus paradoxus, a diploid hybrid species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

The genetics and biochemistry of floral pigments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Genetic changes associated with floral adaptation restrict future evolutionary potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Recent advances in the biosynthesis and accumulation of anthocyanins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Transgressive segregation, adaptation and speciation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

Pollinator preference and the evolution of floral traits in monkeyflowers (Mimulus)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

29 September 2017

RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

3 June 2018

Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

3 June 2018

Streaming fragment assignment for real-time analysis of sequencing experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240417

3 June 2018

Hybridization as an Evolutionary Stimulus

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

The complex transcriptional landscape of the anucleate human platelet

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Convergence, constraint and the role of gene expression during adaptive radiation: floral anthocyanins in Aquilegia

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Population genetics, pleiotropy, and the preferential fixation of mutations during adaptive evolution.

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Genetic architecture of floral traits in Iris hexagona and Iris fulva

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta)

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Preoperative assessment and treatment of appendiceal mucocele complicated by acute torsion: a case report

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genome

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

A genome-wide association study of seed protein and oil content in soybean.

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Evolutionary Relationships Within the Species-Rich Genus Ruellia (Acanthaceae)

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

TTG1 complex MYBs, MYB5 and TT2, control outer seed coat differentiation.

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds.

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Is floral specialization an evolutionary dead-end? Pollination system transitions in Ruellia (Acanthaceae).

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

Regularized gene selection in cancer microarray meta-analysis

1 reference

https://api.crossref.org/works/10.1186%2FS12870-016-0962-6

21 January 2018

The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae).

1 reference

https://pubmed.ncbi.nlm.nih.gov/28095782

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hybridization as a Source of Variation for Adaptation to New Environments

1 reference

https://pubmed.ncbi.nlm.nih.gov/28095782

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12870-016-0962-6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Dimensions Publication ID

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PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28095782%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

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