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SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics

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SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics (English)

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Julie Ahringer

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Przemyslaw Stempor

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1

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Przemyslaw Stempor

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author name string

Przemyslaw Stempor

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1

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language of work or name

English

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publication date

2016

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published in

Wellcome Open Research

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volume

1

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page(s)

14

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copyright license

Creative Commons Attribution 4.0 International

start time

15 November 2016

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April 2022 Public Data File from Crossref

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copyrighted

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describes a project that uses

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ggplot

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Orchestrating high-throughput genomic analysis with Bioconductor

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PubMed Central

reference URL

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retrieved

17 March 2017

Cistrome: an integrative platform for transcriptional regulation studies

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PubMed Central

reference URL

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retrieved

17 March 2017

Comparative analysis of the transcriptome across distant species

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PubMed Central

reference URL

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retrieved

29 September 2017

deepTools: a flexible platform for exploring deep-sequencing data.

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5133382

retrieved

29 September 2017

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5133382

retrieved

29 September 2017

Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5133382

retrieved

29 September 2017

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5133382

retrieved

29 September 2017

BigWig and BigBed: enabling browsing of large distributed datasets

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5133382

retrieved

29 September 2017

Identifiers

DOI

10.12688/WELLCOMEOPENRES.10004.1

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(Q28590755)

SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics

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