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The RNA helicase Ddx5/p68 binds to hUpf3 and enhances NMD of Ddx17/p72 and Smg5 mRNA
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scholarly article
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PubMed
PubMed ID
23788676
retrieved
1 February 2017
title
The RNA helicase Ddx5/p68 binds to hUpf3 and enhances NMD of Ddx17/p72 and Smg5 mRNA
(English)
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stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
main subject
DEAD-box helicase 5
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stated in
GOA release 2020-03-11
ribonucleoprotein complex binding
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GOA release 2020-03-11
author name string
Verena Geißler
series ordinal
1
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PubMed
PubMed ID
23788676
retrieved
1 February 2017
Simone Altmeyer
series ordinal
2
1 reference
stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
Benjamin Stein
series ordinal
3
1 reference
stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
Heike Uhlmann-Schiffler
series ordinal
4
1 reference
stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
Hans Stahl
series ordinal
5
1 reference
stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
language of work or name
English
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publication date
1 September 2013
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stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
published in
Nucleic Acids Research
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stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
volume
41
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stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
page(s)
7875–7888
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stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
issue
16
1 reference
stated in
PubMed
PubMed ID
23788676
retrieved
1 February 2017
copyright license
Creative Commons Attribution 3.0 Unported
start time
7 November 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
The RNA helicase DDX5/p68 is a key factor promoting c-fos expression at different levels from transcription to mRNA export
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Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex
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A new MIF4G domain-containing protein, CTIF, directs nuclear cap-binding protein CBP80/20-dependent translation
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A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
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Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay
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Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
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Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
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MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
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Y14 and hUpf3b form an NMD-activating complex
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Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation
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The highly related DEAD box RNA helicases p68 and p72 exist as heterodimers in cells
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Characterization of human Smg5/7a: a protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1.
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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
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Absence of Dbp2p alters both nonsense-mediated mRNA decay and rRNA processing
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Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1
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Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)
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p72: a human nuclear DEAD box protein highly related to p68
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RNA helicase DDX5 is a p53-independent target of ARF that participates in ribosome biogenesis.
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RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.
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Upf1 senses 3'UTR length to potentiate mRNA decay
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Remodeling of the pioneer translation initiation complex involves translation and the karyopherin importin beta
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Comparison of nonsense-mediated mRNA decay efficiency in various murine tissues
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The DEAD box RNA helicases p68 (Ddx5) and p72 (Ddx17): novel transcriptional co-regulators.
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Inhibition of nonsense-mediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies
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An alternative branch of the nonsense-mediated decay pathway
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Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast
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Gene set coregulated by the Saccharomyces cerevisiae nonsense-mediated mRNA decay pathway.
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ATPase/helicase activities of p68 RNA helicase are required for pre-mRNA splicing but not for assembly of the spliceosome
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Phosphorylations of DEAD box p68 RNA helicase are associated with cancer development and cell proliferation
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Crystal structure of the human ATP-dependent splicing and export factor UAP56.
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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
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Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast
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29 September 2017
SMG-5, required for C.elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A.
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29 September 2017
The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis
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29 September 2017
Differential modulation of cellular signaling pathways by mild and severe hypovirus strains
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29 September 2017
Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts
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29 September 2017
Rearrangement of structured RNA via branch migration structures catalysed by the highly related DEAD-box proteins p68 and p72.
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29 September 2017
Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
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A regulatory mechanism that detects premature nonsense codons in T-cell receptor transcripts in vivo is reversed by protein synthesis inhibitors in vitro
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Monoclonal antibodies specific for the carboxy terminus of simian virus 40 large T antigen
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eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells
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Translation drives mRNA quality control
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UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
A UPF3-mediated regulatory switch that maintains RNA surveillance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
Redundant role of DEAD box proteins p68 (Ddx5) and p72/p82 (Ddx17) in ribosome biogenesis and cell proliferation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
Expression of p68 RNA helicase is closely related to the early stage of adipocyte differentiation of mouse 3T3-L1 cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
Expression of the 'dead box' RNA helicase p68 is developmentally and growth regulated and correlates with organ differentiation/maturation in the fetus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
3 June 2018
Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
Conformational changes of DEAD-box helicases monitored by single molecule fluorescence resonance energy transfer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
The DEAD-box RNA helicase DDX3 interacts with DDX5, co-localizes with it in the cytoplasm during the G2/M phase of the cycle, and affects its shuttling during mRNP export
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
A chemiluminescence-based reporter system to monitor nonsense-mediated mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
Overexpression and poly-ubiquitylation of the DEAD-box RNA helicase p68 in colorectal tumours.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
p68, a DEAD-box RNA helicase, is expressed in chordate embryo neural and mesodermal tissues.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
SV40 large T shares an antigenic determinant with a cellular protein of molecular weight 68,000.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
RNA helicase activity associated with the human p68 protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3763533
retrieved
27 November 2018
Involvement of RNA helicases p68 and p72 in colon cancer
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23788676
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKT538
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4236056
Fatcat ID
release_2io55s7okvcfjiguzxo2toom4i
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/2io55s7okvcfjiguzxo2toom4i
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
OpenCitations bibliographic resource ID
4236056
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4236056
PMCID
3763533
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4236056
PubMed ID
23788676
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4236056
ResearchGate publication ID
240310002
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