(Q28597797)

Continued use of retracted papers: Temporal trends in citations and (lack of) awareness of retractions shown in citation contexts in biomedicine

title

Molecular phylogeny of sequenced Saccharomycetes reveals polyphyly of the alternative yeast codon usage (English)

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Molecular phylogeny of sequenced saccharomycetes reveals polyphyly of the alternative yeast codon usage (English)

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molecular phylogenetics

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author name string

Stefanie Mühlhausen

series ordinal

1

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Martin Kollmar

series ordinal

2

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language of work or name

English

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publication date

22 July 2014

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published in

Genome Biology and Evolution

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volume

6

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page(s)

3222-37

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issue

12

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5

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cites work

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Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen

17 March 2017

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Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

A rapid bootstrap algorithm for the RAxML Web servers

17 March 2017

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A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

17 March 2017

1 reference

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Application of phylogenetic networks in evolutionary studies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

17 March 2017

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The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Genome evolution in yeasts

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

WebLogo: A Sequence Logo Generator

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

The diploid genome sequence of Candida albicans

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

A molecular timescale of eukaryote evolution and the rise of complex multicellular life

17 March 2017

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MrBayes 3: Bayesian phylogenetic inference under mixed models

17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Molecular evidence for the early colonization of land by fungi and plants

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Minor structural consequences of alternative CUG codon usage (Ser for Leu) in Candida albicans exoglucanase

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Ubiquinone. Biosynthesis of quinone ring and its isoprenoid side chain. Intracellular localization

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Non-universal decoding of the leucine codon CUG in several Candida species

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

ProtTest 3: fast selection of best-fit models of protein evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Multiple sequence alignment using ClustalW and ClustalX

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

TimeTree: a public knowledge-base of divergence times among organisms

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Candida albicans CUG mistranslation is a mechanism to create cell surface variation.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Alloascoidea hylecoeti gen. nov., comb. nov., Alloascoidea africana comb. nov., Ascoidea tarda sp. nov., and Nadsonia starkeyi-henricii comb. nov., new members of the Saccharomycotina (Ascomycota).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

tRNA Modification and Genetic Code Variations in Animal Mitochondria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

The genetic code of the fungal CTG clade.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

WebScipio: an online tool for the determination of gene structures using protein sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

A genetic code alteration is a phenotype diversity generator in the human pathogen Candida albicans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Rhynie chert: a window into a lost world of complex plant-fungus interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Pfarao: a web application for protein family analysis customized for cytoskeletal and motor proteins (CyMoBase)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Metabolism and function of coenzyme Q.

29 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

29 September 2017

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5' end of the large-subunit (26S) ribosomal DNA gene

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Genetic code deviations in the ciliates: evidence for multiple and independent events

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Draft genome sequence of the yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

Predicting functionally important residues from sequence conservation.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

[Taxonomy and ecology of the genus Candida]

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

treePL: divergence time estimation using penalized likelihood for large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

Non-universal usage of the leucine CUG codon and the molecular phylogeny of the genus Candida.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

Alternative CUG codon usage (Ser for Leu) in Pichia farinosa and the effect of a mutated killer gene in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU152

Phylogenetics of Saccharomycetales, the ascomycete yeasts.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986446

27 November 2018

Identifiers

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3340164

3340164

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1 reference

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