(Q28608460)

Matthew D Teasdale

4

0 references

Kévin Rue-Albrecht

Kévin Rue-Albrecht

12

0 references

Steven G Schroeder

Steven Schroeder

13

0 references

Brendan Loftus

Brendan J Loftus

18

0 references

Charles Spillane

Charles Spillane

14

0 references

David E. MacHugh

David E MacHugh

19

0 references

Daniel G. Bradley

Daniel G Bradley

16

0 references

author name string

Stephen D E Park

1

0 references

David A Magee

2

0 references

Paul A McGettigan

3

0 references

Amanda J Lohan

6

0 references

Alison Murphy

7

0 references

Martin Braud

8

0 references

Mark T Donoghue

9

0 references

Yuan Liu

10

0 references

Andrew T Chamberlain

11

0 references

Shuaishuai Tai

15

0 references

Tad S Sonstegard

Creative Commons Attribution 4.0 International

17

0 references

language of work or name

English

0 references

publication date

26 October 2015

0 references

published in

Genome Biology

0 references

volume

16

0 references

issue

1

0 references

page(s)

234

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copyright license

start time

26 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ArcGIS

ArcGIS

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s13059-015-0790-2

0 references

cites work

Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth

1 reference

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Prehistoric genomes reveal the genetic foundation and cost of horse domestication

17 March 2017

1 reference

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Speciation with gene flow in equids despite extensive chromosomal plasticity

17 March 2017

1 reference

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Incorporation of aurochs into a cattle herd in Neolithic Europe: single event or breeding?

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genomic methylation patterns in archaeological barley show de-methylation as a time-dependent diagenetic process

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Classic selective sweeps revealed by massive sequencing in cattle

17 March 2017

1 reference

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The genome of a Late Pleistocene human from a Clovis burial site in western Montana

17 March 2017

1 reference

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The complete genome sequence of a Neanderthal from the Altai Mountains

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

New World cattle show ancestry from multiple independent domestication events

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Analyses of pig genomes provide insight into porcine demography and evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A high-coverage genome sequence from an archaic Denisovan individual

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Origin and spread of Bos taurus: new clues from mitochondrial genomes belonging to haplogroup T1

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Dual origins of dairy cattle farming--evidence from a comprehensive survey of European Y-chromosomal variation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

The enigmatic origin of bovine mtDNA haplogroup R: sporadic interbreeding or an independent event of Bos primigenius domestication in Italy?

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A Draft Sequence of the Neandertal Genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Multiple paternal origins of domestic cattle revealed by Y-specific interspersed multilocus microsatellites

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Whole-genome resequencing reveals loci under selection during chicken domestication

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Reconstructing Indian population history

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

The Neandertal genome and ancient DNA authenticity

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

The multifaceted origin of taurine cattle reflected by the mitochondrial genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Development and characterization of a high density SNP genotyping assay for cattle

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

The genome sequence of taurine cattle: a window to ruminant biology and evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Y-SNPs do not indicate hybridisation between European aurochs and domestic cattle

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Temporal fluctuations of Y-chromosomal variation in Bos taurus

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Population structure and eigenanalysis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Inference of population structure using multilocus genotype data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A test of neutral molecular evolution based on nucleotide data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A framework for variation discovery and genotyping using next-generation DNA sequencing data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Testing for ancient admixture between closely related populations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A whole-genome assembly of the domestic cow, Bos taurus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Evolution, consequences and future of plant and animal domestication

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genetic evidence for Near-Eastern origins of European cattle

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Inference of population splits and mixtures from genome-wide allele frequency data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genome flux and stasis in a five millennium transect of European prehistory

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Sequencing and annotated analysis of the Holstein cow genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

The biogeography of mitochondrial and nuclear discordance in animals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Differences in selection drive olfactory receptor genes in different directions in dogs and wolf

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

The origins of animal domestication and husbandry: a major change in the history of humanity and the biosphere

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

MapMi: automated mapping of microRNA loci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Role of FADS1 and FADS2 polymorphisms in polyunsaturated fatty acid metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Dyrk1A binds to multiple endocytic proteins required for formation of clathrin-coated vesicles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

FcRH1: an activation coreceptor on human B cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Evidence for two independent domestications of cattle.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Zebu-taurine variation in Y chromosomal DNA: a sensitive assay for genetic introgression in west African trypanotolerant cattle populations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

Mitochondrial genomes of extinct aurochs survive in domestic cattle

29 September 2017

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Meta-Analysis of Mitochondrial DNA Reveals Several Population Bottlenecks during Worldwide Migrations of Cattle

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

A novel USP9Y polymorphism allowing a rapid and unambiguous classification of Bos taurus Y chromosomes into haplogroups.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Maternal and paternal genealogy of Eurasian taurine cattle (Bos taurus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Domestication does not narrow MHC diversity in Sus scrofa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-015-0790-2

Morphological and genetic evidence for early Holocene cattle management in northeastern China.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4620651

10.1186/S13059-015-0790-2

27 November 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

1158825

1023957488

0 references

1158825

1 reference

1 reference

1 reference