(Q28646401)

4

0 references

Fabien L. Condamine

1

object named as

Fabien L Condamine

0 references

Nathalie S. Nagalingum

2

object named as

Nathalie S Nagalingum

0 references

author name string

Charles R Marshall

Nuclear ribosomal ITS functional paralogs resolve the phylogenetic relationships of a late-Miocene radiation cycad Cycas (Cycadaceae)

3

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language of work or name

English

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publication date

17 April 2015

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published in

BMC Evolutionary Biology

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volume

15

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issue

1

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page(s)

65

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Calibrated birth-death phylogenetic time-tree priors for bayesian inference

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Integrating fossils, phylogenies, and niche models into biogeography to reveal ancient evolutionary history: the case of Hypericum (hypericaceae)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Cretaceous environmental changes led to high extinction rates in a hyperdiverse beetle family

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Phylogenetic distribution of extant richness suggests metamorphosis is a key innovation driving diversification in insects

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

The fossilized birth-death process for coherent calibration of divergence-time estimates

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Evidence of constant diversification punctuated by a mass extinction in the African cycads

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Chloroplast phylogenomics indicates that Ginkgo biloba is sister to cycads

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Rise to dominance of angiosperm pioneers in European Cretaceous environments

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Hemisphere-scale differences in conifer evolutionary dynamics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Thrips pollination of Mesozoic gymnosperms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Distribution of living Cupressaceae reflects the breakup of Pangea

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Diversification of land plants: insights from a family-level phylogenetic analysis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Reconciling molecular phylogenies with the fossil record

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Calibrated tree priors for relaxed phylogenetics and divergence time estimation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Establishing a time-scale for plant evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Angiosperm diversification through time

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Relaxed phylogenetics and dating with confidence

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Molecular clocks: four decades of evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

The conditioned reconstructed process

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Extinction rates should not be estimated from molecular phylogenies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Rocks and clocks: calibrating the Tree of Life using fossils and molecules

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Age-dependent speciation can explain the shape of empirical phylogenies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Using more than the oldest fossils: dating osmundaceae with three Bayesian clock approaches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Unveiling the diversification dynamics of Australasian predaceous diving beetles in the Cenozoic

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Analysis and visualization of complex macroevolutionary dynamics: an example from Australian scincid lizards

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Phylogenetic approaches for studying diversification

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Three keys to the radiation of angiosperms into freezing environments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Recent synchronous radiation of a living fossil

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Mass extinction, gradual cooling, or rapid radiation? Reconstructing the spatiotemporal evolution of the ancient angiosperm genus Hedyosmum (Chloranthaceae) using empirical and simulated approaches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

The Enigmatic Paleozoic plants Spermopteris and Phasmatocycas reconsidered

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Cataphylls of the Middle Triassic cycad Antarcticycas schopfii and new insights into cycad evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Improving marginal likelihood estimation for Bayesian phylogenetic model selection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Diversity dynamics: molecular phylogenies need the fossil record

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Explosive radiation or cryptic mass extinction? Interpreting signatures in molecular phylogenies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Testing co-evolutionary hypotheses over geological timescales: interactions between Mesozoic non-avian dinosaurs and cycads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Mass extinction events and the plant fossil record

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Dating dispersal and radiation in the gymnosperm Gnetum (Gnetales)--clock calibration when outgroup relationships are uncertain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Molecular relationships in Encephalartos (Zamiaceae, Cycadales) based on nucleotide sequences of nuclear ITS 1&2, rbcL, and genomic ISSR fingerprinting

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Ferns diversified in the shadow of angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Inference of higher-order relationships in the cycads from a large chloroplast data set.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Extinction rates can be estimated from molecular phylogenies.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Plant-insect interactions: double-dating associated insect and plant lineages reveals asynchronous radiations

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Branch-length prior influences Bayesian posterior probability of phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Cycas fushunensis sp. nov. (Cycadaceae) from the Eocene of northeast China

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

The Families and Genera of Cycads: A Molecular Phylogenetic Analysis of Cycadophyta Based on Nuclear and Plastid DNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Two new species of Bowenia Hook, ex Hook, f. from the Eocene of eastern Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Elkinsia gen. nov., a Late Devonian Gymnosperm with Cupulate Ovules

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Computing Bayes factors using thermodynamic integration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Can extinction rates be estimated without fossils?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Phylogenetic Approaches to the Study of Extinction

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Extinction can be estimated from moderately sized molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Bayesian Evolutionary Analysis with BEAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

The Posterior and the Prior in Bayesian Phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Extinction: bad genes or bad luck?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4449600

Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis

27 November 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

Patterns in vascular land plant diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-015-0347-8

10.1186/S12862-015-0347-8

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12862-015-0347-8

1 reference

1 reference

PubMed publication ID

25884423

1 reference