(Q28662197)

English

Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods

scientific article (publication date: November 2013)

In more languages

Statements

scholarly article

0 references

Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods (English)

0 references

1 reference

based on heuristic

inferred from title

8

object named as

Carl E Lewis

0 references

Javier Francisco-Ortega

5

object named as

Javier Francisco-Ortega

0 references

Dennis William Stevenson

7

object named as

Dennis W Stevenson

0 references

2

object named as

Alan W Meerow

0 references

author name string

Dayana E Salas-Leiva

1

0 references

Michael Calonje

3

0 references

M Patrick Griffith

4

0 references

Kyoko Nakamura

6

0 references

Sandra Namoff

9

0 references

language of work or name

0 references

publication date

November 2013

0 references

Annals of Botany

0 references

112

0 references

7

0 references

1263-78

0 references

Thrips pollination of Mesozoic gymnosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Bayesian phylogenetics with BEAUti and the BEAST 1.7

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

The Chicxulub asteroid impact and mass extinction at the Cretaceous-Paleogene boundary

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Arecaceae) [corrected] identifies Syagrus as sister group of the coconut

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Paraphyly of organelle DNAs in Cycas Sect. Asiorientales due to ancient ancestral polymorphisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

In vitro digestibility of fern and gymnosperm foliage: implications for sauropod feeding ecology and diet selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Relaxed phylogenetics and dating with confidence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Expressed sequence tag analysis in Cycas, the most primitive living seed plant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Incomplete taxon sampling is not a problem for phylogenetic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

17 March 2017

Bayesian inference of species trees from multilocus data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

Bayesian phylogenetic analysis of combined data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

Gene tree discordance, phylogenetic inference and the multispecies coalescent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

Is a new and general theory of molecular systematics emerging?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

High-resolution species trees without concatenation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

Ribosomal ITS sequences and plant phylogenetic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

7 April 2017

Enhancing PCR amplification of DNA from recalcitrant plant specimens using a trehalose-based additive

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Reprint of: using nuclear gene data for plant phylogenetics: progress and prospects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Recent synchronous radiation of a living fossil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Cataphylls of the Middle Triassic cycad Antarcticycas schopfii and new insights into cycad evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: incomplete concerted evolution and the origin of pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Coalescent methods for estimating phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Testing co-evolutionary hypotheses over geological timescales: interactions between Mesozoic non-avian dinosaurs and cycads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Estimating species trees using multiple-allele DNA sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

How well do we understand the overall backbone of cycad phylogeny? New insights from a large, multigene plastid data set.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Inconsistency of phylogenetic estimates from concatenated data under coalescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Discordance of species trees with their most likely gene trees.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Cenozoic plant diversity in the neotropics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Molecular relationships in Encephalartos (Zamiaceae, Cycadales) based on nucleotide sequences of nuclear ITS 1&2, rbcL, and genomic ISSR fingerprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Cycads: evolutionary innovations and the role of plant-derived neurotoxins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Inference of higher-order relationships in the cycads from a large chloroplast data set.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Trees within trees: genes and species, molecules and morphology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Phylogenetics and the origin of species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

A vicilin-like seed protein of cycads: similarity to sucrose-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

3 June 2018

Phylogeny of Veronica in the Southern and Northern Hemispheres based on plastid, nuclear ribosomal and nuclear low-copy DNA.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

The Mostly Male Theory of Flower Evolutionary Origins: From Genes to Fossils

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Branch and bound algorithms to determine minimal evolutionary trees

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

The Families and Genera of Cycads: A Molecular Phylogenetic Analysis of Cycadophyta Based on Nuclear and Plastid DNA Sequences

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Is Cycas revoluta (Cycadaceae) wind- or insect-pollinated?

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

BEST: Bayesian estimation of species trees under the coalescent model.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

The Continuing Search: Low-Copy Nuclear Sequences for Lower-Level Plant Molecular Phylogenetic Studies

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

The sequence of the largest subunit of RNA polymerase II is a useful marker for inferring seed plant phylogeny.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Origin and evolution of North American polyploid Silene (Caryophyllaceae).

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Angiosperm Biogeography and Past Continental Movements

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Molecular Phylogenetic Studies of Caribbean Palms (Arecaceae) and Their Relationships to Biogeography and Conservation

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Cycads: their evolution, toxins, herbivores and insect pollinators.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Molecular evolution of the AP2 subfamily.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

A Formal Classification of the Extant Cycads

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Further analysts of the data by akaike' s information criterion and the finite corrections

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Odor-mediated push-pull pollination in cycads

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Conservation of class C function of floral organ development during 300 million years of evolution from gymnosperms to angiosperms.

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Does better taxon sampling help? A new phylogenetic hypothesis for Sepsidae (Diptera: Cyclorrhapha) based on 50 new taxa and the same old mitochondrial and nuclear markers

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

A new genus of Late Cretaceous cycad stem from Argentina, with reappraisal of known forms

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

A petrified cycad trunk from the Late Cretaceous of the Larsen Basin, Antarctica

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT192

21 January 2018

Bayesian estimation of concordance among gene trees.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3806525

27 November 2018

Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects

1 reference

https://pubmed.ncbi.nlm.nih.gov/23997230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RPB2 gene phylogeny in flowering plants, with particular emphasis on asterids

1 reference

https://pubmed.ncbi.nlm.nih.gov/23997230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/AOB/MCT192

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q28662197&oldid=2158572478"