(Q28650986)

25 June 2017

title

Degeneration of the nonrecombining regions in the mating-type chromosomes of the anther-smut fungi (English)

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Julie Poulain

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Valérie Barbe

5

object named as

Valérie Barbe

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Damien de Vienne

object named as

Damien M de Vienne

7

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Patrick Wincker

10

object named as

Patrick Wincker

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25 June 2017

2

Michael E Hood

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25 June 2017

4

Elsa Petit

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25 June 2017

Eric Fontanillas

1

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25 June 2017

Hélène Badouin

3

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25 June 2017

Gabriela Aguileta

8

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25 June 2017

Zehua Chen

11

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25 June 2017

Su San Toh

12

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25 June 2017

Michael H Perlin

14

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25 June 2017

Pierre Gladieux

15

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25 June 2017

language of work or name

English

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publication date

21 December 2014

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Molecular Biology and Evolution

25 June 2017

published in

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25 June 2017

volume

32

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25 June 2017

issue

4

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25 June 2017

page(s)

928-943

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InterProScan 5: genome-scale protein function classification

25 June 2017

cites work

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes

17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Implications of molecular characters for the phylogeny of the Microbotryaceae (Basidiomycota: Urediniomycetes)

17 March 2017

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High mutation rates have driven extensive structural polymorphism among human Y chromosomes

17 March 2017

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Convergent evolution of chromosomal sex-determining regions in the animal and fungal kingdoms

17 March 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

17 March 2017

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Mating System of the Anther Smut Fungus Microbotryum violaceum: Selfing under Heterothallism

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

jModelTest 2: more models, new heuristics and parallel computing

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Bayes empirical bayes inference of amino acid sites under positive selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

An algorithm for progressive multiple alignment of sequences with insertions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Maintaining two mating types: structure of the mating type locus and its role in heterokaryosis in Podospora anserina

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Evolution of uni- and bifactorial sexual compatibility systems in fungi

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Extensive divergence between mating-type chromosomes of the anther-smut fungus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

A normalization strategy for comparing tag count data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Are all sex chromosomes created equal?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Having sex, yes, but with whom? Inferences from fungi on the evolution of anisogamy and mating types

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Degeneration in codon usage within the region of suppressed recombination in the mating-type chromosomes of Neurospora tetrasperma.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Dynamic linkage relationships to the mating-type locus in automictic fungi of the genus Microbotryum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Evolutionary strata in a small mating-type-specific region of the smut fungus Microbotryum violaceum.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

The evolution of restricted recombination in sex chromosomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

The mating-type chromosome in the filamentous ascomycete Neurospora tetrasperma represents a model for early evolution of sex chromosomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Optical mapping as a routine tool for bacterial genome sequence finishing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Evolution of amino-acid sequences and codon usage on the Drosophila miranda neo-sex chromosomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

The evolution of intratetrad mating rates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Repetitive DNA in the automictic fungus Microbotryum violaceum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Steps in the evolution of heteromorphic sex chromosomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Regulation of mating and pathogenic development in Ustilago maydis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Shared forces of sex chromosome evolution in haploid-mating and diploid-mating organisms: Microbotryum violaceum and other model organisms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Intratetrad mating and the evolution of linkage relationships

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Mating within the meiotic tetrad and the maintenance of genomic heterozygosity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Dimorphic mating-type chromosomes in the fungus Microbotryum violaceum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Intratetrad mating, heterozygosity, and the maintenance of deleterious alleles in Microbotryum violaceum (=Ustilago violacea).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Sex chromosomal transposable element accumulation and male-driven substitutional evolution in humans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Four evolutionary strata on the human X chromosome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Population structure of the human pseudoautosomal boundary

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

Degenerating Y chromosome of Drosophila miranda: a trap for retrotransposons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

The evolution of sex chromosomes

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Phylogenetic determinants of potential host shifts in fungal pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Substitution rates in the X- and Y-linked genes of the plants, Silene latifolia and S. dioica

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Phylogenetic evidence of host-specific cryptic species in the anther smut fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Evidence for degeneration of the Y chromosome in the dioecious plant Silene latifolia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Linkage to the mating-type locus across the genus Microbotryum: insights into nonrecombining chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Anther smuts of Caryophyllaceae: Molecular characters indicate host-dependent species delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU396

Statistical tests for detecting gene conversion.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379399

The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection

27 November 2018

1 reference

12 December 2020

Genetics of Ustilago violacea. XXXII. Genetic evidence for transposable elements

1 reference

12 December 2020

EVOLUTION OF REPRODUCTIVE ISOLATION WITHIN A PARASITIC FUNGAL SPECIES COMPLEX

1 reference

12 December 2020

[Various characteristics of gene localization in eukaryotic chromosomes. Formulation of a problem and analysis of non-random localization of mating type loci in fungi]

1 reference

12 December 2020

Identifiers

DOI

10.1093/MOLBEV/MSU396

1 reference

25 June 2017

0 references

1 reference