(Q28652190)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

title

A genome-wide map of hyper-edited RNA reveals numerous new sites (English)

1 reference

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13 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Shai Carmi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Erez Y. Levanon

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

author name string

Hagit T Porath

1

0 references

Shai Carmi

2

0 references

Erez Y Levanon

3

0 references

language of work or name

English

0 references

publication date

27 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

page(s)

4726

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International

13 March 2020

copyright license

start time

27 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome

1 reference

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Adenosine-to-inosine RNA editing and human disease

17 March 2017

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miRBase: annotating high confidence microRNAs using deep sequencing data

17 March 2017

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RADAR: a rigorously annotated database of A-to-I RNA editing

17 March 2017

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17 March 2017

The ADAR protein family

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Darned in 2013: inclusion of model organisms and linking with Wikipedia

17 March 2017

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High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

17 March 2017

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Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs

17 March 2017

1 reference

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17 March 2017

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Functions and regulation of RNA editing by ADAR deaminases

17 March 2017

1 reference

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Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

17 March 2017

1 reference

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RNA granules: post-transcriptional and epigenetic modulators of gene expression

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Modulation of microRNA processing and expression through RNA editing by ADAR deaminases

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Regulating gene expression through RNA nuclear retention

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Identification of RNA editing sites in the SNP database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

17 March 2017

1 reference

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Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Mfold web server for nucleic acid folding and hybridization prediction

17 March 2017

1 reference

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RNA editing by adenosine deaminases that act on RNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

BLAT—The BLAST-Like Alignment Tool

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Specific cleavage of hyper-edited dsRNAs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Primer3 on the WWW for general users and for biologist programmers

17 March 2017

1 reference

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

7 April 2017

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

7 April 2017

1 reference

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Antisense transcription in the mammalian transcriptome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

The evolution of gene expression levels in mammalian organs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Systematic identification of abundant A-to-I editing sites in the human transcriptome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Widespread occurrence of antisense transcription in the human genome

7 April 2017

1 reference

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Alu elements shape the primate transcriptome by cis-regulation of RNA editing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Deciphering the functions and regulation of brain-enriched A-to-I RNA editing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

REDItools: high-throughput RNA editing detection made easy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

APOBEC3B is an enzymatic source of mutation in breast cancer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Identifying RNA editing sites using RNA sequencing data alone

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

RNA editing in the human ENCODE RNA-seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Transcript diversification in the nervous system: a to I RNA editing in CNS function and disease development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Accurate identification of human Alu and non-Alu RNA editing sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Tudor-SN and ADAR1 are components of cytoplasmic stress granules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Identification of widespread ultra-edited human RNAs.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Competition between ADAR and RNAi pathways for an extensive class of RNA targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Predicting sites of ADAR editing in double-stranded RNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Double-stranded RNAs containing multiple IU pairs are sufficient to suppress interferon induction and apoptosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

DARNED: a DAtabase of RNa EDiting in humans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

A-to-I RNA editing and human disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

RNA editing level in the mouse is determined by the genomic repeat repertoire

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

A survey of RNA editing in human brain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Widespread RNA editing of embedded alu elements in the human transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4365171

Evidence for large diversity in the human transcriptome created by Alu RNA editing

20 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5726

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5726

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5726

Large-scale DNA editing of retrotransposons accelerates mammalian genome evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5726

Is abundant A-to-I RNA editing primate-specific?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5726

The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5726

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25158696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS5726

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

13 March 2020

ADS bibcode

2014NatCo...5.4726P

0 references

1014949244

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

PubMed publication ID

25158696

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25158696%20AND%20SRC:MED&resulttype=core&format=json