(Q28655607)

13

0 references

Jennifer Harrow

14

Jennifer Harrow

0 references

Cristina Sisu

Cristina Sisu

1

0 references

Mark Bender Gerstein

Mark B Gerstein

15

0 references

Joel Rozowsky

Joel Rozowsky

12

0 references

Adam Frankish

4

Adam Frankish

0 references

Mark Diekhans

11

Mark Diekhans

0 references

Daifeng Wang

8

Daifeng Wang

0 references

Baikang Pei

2

Baikang Pei

0 references

Suganthi Balasubramanian

6

Suganthi Balasubramanian

0 references

Rachel A. Harte

7

Rachel Harte

0 references

author name string

Jing Leng

3

0 references

Yan Zhang

5

0 references

Michael Rutenberg-Schoenberg

9

0 references

Wyatt Clark

Proceedings of the National Academy of Sciences of the United States of America

10

0 references

language of work or name

English

0 references

publication date

16 September 2014

0 references

published in

0 references

volume

111

0 references

issue

37

0 references

page(s)

13361-6

0 references

cites work

A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The GENCODE pseudogene resource

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Emergence of young human genes after a burst of retroposition in primates

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

A genome-wide survey of human pseudogenes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The DNA sequence of human chromosome 7

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Identification of pseudogenes in the Drosophila melanogaster genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Initial sequencing and comparative analysis of the mouse genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Pseudogene evolution and natural selection for a compact genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Meiotic recombination, noncoding DNA and genomic organization in Caenorhabditis elegans

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The origins of genome complexity

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The zebrafish reference genome sequence and its relationship to the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The complete human olfactory subgenome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Comparative analysis of the transcriptome across distant species

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Regulatory element copy number differences shape primate expression profiles.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Functional evidence of post-transcriptional regulation by pseudogenes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Burst of young retrogenes and independent retrogene formation in mammals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The Caenorhabditis chemoreceptor gene families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

L1 elements, processed pseudogenes and retrogenes in mammalian genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Dosage compensation in mammals: fine-tuning the expression of the X chromosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Characteristics and clustering of human ribosomal protein genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Evolution of the NANOG pseudogene family in the human and chimpanzee genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Human, mouse, and rat genome large-scale rearrangements: stability versus speciation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Diverse fates of paralogs following segmental duplication of telomeric genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Comparative recombination rates in the rat, mouse, and human genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Extensive gene traffic on the mammalian X chromosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Genomics. Defining genes in the genomics era.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

Characterization and molecular analysis of Adh retrosequences in species of the Drosophila obscura group.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169933

PseudoPipe: an automated pseudogene identification pipeline

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

Comparative analysis of regulatory information and circuits across distant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

Analysis of Nuclear Receptor Pseudogenes in Vertebrates: How the Silent Tell Their Stories

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

A genomic bias for genotype-environment interactions in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

Genome evolution and developmental constraint in Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

Genomics: protein fossils live on as RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407293111

SNPs on human chromosomes 21 and 22 -- analysis in terms of protein features and pseudogenes

21 January 2018

1 reference

12 December 2020

Pseudogene evolution in Drosophila suggests a high rate of DNA loss

1 reference

12 December 2020

Processed pseudogenes interfere with reverse transcriptase-polymerase chain reaction controls

1 reference

12 December 2020

Patterns and rates of indel evolution in processed pseudogenes from humans and murids

1 reference

12 December 2020

Pitfalls of processed pseudogenes in RT-PCR

1 reference

12 December 2020

Microsatellites reveal male recombination and neo-sex chromosome formation in Scaptodrosophila hibisci (Drosophilidae)

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1407293111

1 reference

3581218

ADS bibcode

2014PNAS..11113361S

0 references

3581218

1 reference

1 reference

1 reference