(Q28657421)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Towards a computational model of a methane producing archaeum (English)

1 reference

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14 March 2020

0 references

1 reference

1 reference

2

1 reference

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14 March 2020

Ankur Jain

5

1 reference

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14 March 2020

Taekjip Ha

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Zaida Luthey-Schulten

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

author name string

Joseph R Peterson

1

1 reference

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14 March 2020

Jeremy R Ellermeier

3

1 reference

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14 March 2020

Petra R A Kohler

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

William W Metcalf

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

language of work or name

English

0 references

publication date

4 March 2014

1 reference

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14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

volume

2014

1 reference

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14 March 2020

page(s)

898453

1 reference

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Creative Commons Attribution 3.0 Unported

14 March 2020

copyright license

start time

1 January 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

CellProfiler

object named as

CellProfiler

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

CellProfiler

0 references

cites work

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MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans

17 March 2017

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

17 March 2017

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Molecular signatures of ribosomal evolution

17 March 2017

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Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

17 March 2017

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CellProfiler: image analysis software for identifying and quantifying cell phenotypes

17 March 2017

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Classification of methanogenic bacteria by 16S ribosomal RNA characterization

17 March 2017

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The stepwise evolution of early life driven by energy conservation

17 March 2017

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The evolutionary history of Cys-tRNACys formation

17 March 2017

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Disaggregation of Methanosarcina spp. and Growth as Single Cells at Elevated Osmolarity

17 March 2017

1 reference

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Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: an unusual way of life for a methanogenic archaeon

17 March 2017

1 reference

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On the evolution of structure in aminoacyl-tRNA synthetases

17 March 2017

1 reference

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On the evolution of cells

17 March 2017

1 reference

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The genome of M. acetivorans reveals extensive metabolic and physiological diversity

17 March 2017

1 reference

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Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation

17 March 2017

1 reference

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

17 March 2017

1 reference

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An archaeal genomic signature

17 March 2017

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Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

17 March 2017

1 reference

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Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture

17 March 2017

1 reference

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17 March 2017

The universal ancestor

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Archaea and the prokaryote-to-eukaryote transition

17 March 2017

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Crystal structure of methyl-coenzyme M reductase: the key enzyme of biological methane formation

17 March 2017

1 reference

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

17 March 2017

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17 March 2017

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Purification and properties of N5, N10-methylenetetrahydromethanopterin reductase from Methanobacterium thermoautotrophicum (strain Marburg)

17 March 2017

1 reference

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Purification and properties of 5,10-methenyltetrahydromethanopterin cyclohydrolase from Methanosarcina barkeri

17 March 2017

1 reference

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

17 March 2017

1 reference

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Energy conservation in chemotrophic anaerobic bacteria

17 March 2017

1 reference

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Phylogenetic structure of the prokaryotic domain: The primary kingdoms

17 March 2017

1 reference

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Methanogenic archaea: ecologically relevant differences in energy conservation

17 March 2017

1 reference

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COPASI--a COmplex PAthway SImulator

7 April 2017

1 reference

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Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population.

7 April 2017

1 reference

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Redox-sensitive DNA binding by homodimeric Methanosarcina acetivorans MsvR is modulated by cysteine residues

3 June 2018

1 reference

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Bacterial cell identification in differential interference contrast microscopy images.

3 June 2018

1 reference

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Dissecting specific and global transcriptional regulation of bacterial gene expression

3 June 2018

1 reference

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Localization of Methyl-Coenzyme M reductase as metabolic marker for diverse methanogenic Archaea

3 June 2018

1 reference

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Contribution of transcriptomics to systems-level understanding of methanogenic Archaea

3 June 2018

1 reference

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BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA.

3 June 2018

1 reference

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Activation of methanogenesis by cadmium in the marine archaeon Methanosarcina acetivorans.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains.

3 June 2018

1 reference

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Single-molecule pull-down for studying protein interactions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Genome-scale metabolic reconstruction and hypothesis testing in the methanogenic archaeon Methanosarcina acetivorans C2A.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Atmospheric oxygenation caused by a change in volcanic degassing pressure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Probing cellular protein complexes using single-molecule pull-down

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

3 June 2018

1 reference

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Physiology and posttranscriptional regulation of methanol:coenzyme M methyltransferase isozymes in Methanosarcina acetivorans C2A.

3 June 2018

1 reference

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Mechanism of inhibition by C-terminal alpha-helices of the epsilon subunit of Escherichia coli FoF1-ATP synthase.

3 June 2018

1 reference

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New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes for Methanosarcina species.

3 June 2018

1 reference

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Differential regulation of the three methanol methyltransferase isozymes in Methanosarcina acetivorans C2A

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Structural and functional studies suggest a catalytic mechanism for the phosphotransacetylase from Methanosarcina thermophila

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Effects of nitrogen and carbon sources on transcription of soluble methyltransferases in Methanosarcina mazei strain Go1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Characterization of the acetate binding pocket in the Methanosarcina thermophila acetate kinase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic archaea

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Methanococcus igneus sp. nov., a novel hyperthermophilic methanogen from a shallow submarine hydrothermal system.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Characterization of the intramolecular electron transfer pathway from 2-hydroxyphenazine to the heterodisulfide reductase from Methanosarcina thermophila

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

An anaerobic, intrachamber incubator for growth of Methanosarcina spp. on methanol-containing solid media

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Identification of cysteine and arginine residues essential for the phosphotransacetylase from Methanosarcina thermophila

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Methanogenesis: genes, genomes, and who's on first?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Modulation of the proton-translocation stoichiometry of H(+)-ATP synthases in two phototrophic prokaryotes by external pH.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

CadC, the transcriptional regulatory protein of the cadmium resistance system of Staphylococcus aureus plasmid pI258

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Changes in concentrations of coenzyme F420 analogs during batch growth of Methanosarcina barkeri and Methanosarcina mazei

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

The molybdoenzyme formylmethanofuran dehydrogenase from Methanosarcina barkeri contains a pterin cofactor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Purification and properties of methyl coenzyme M methylreductase from acetate-grown Methanosarcina thermophila

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

Purification and properties of 5,10-methylenetetrahydromethanopterin dehydrogenase and 5,10-methylenetetrahydromethanopterin reductase, two coenzyme F420-dependent enzymes, from Methanosarcina barkeri

3 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960522

3 June 2018

https://api.crossref.org/works/10.1155%2F2014%2F898453

Biogeochemical aspects of atmospheric methane

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Methanogenesis by Methanosarcina acetivorans involves two structurally and functionally distinct classes of heterodisulfide reductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Carbon monoxide dehydrogenase from Methanosarcina frisia Gö1. Characterization of the enzyme and the regulated expression of two operon-like cdh gene clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Genetic, physiological and biochemical characterization of multiple methanol methyltransferase isozymes in Methanosarcina acetivorans C2A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Tetrahydromethanopterin-specific enzymes from Methanopyrus kandleri

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Kinetic study and mathematical modeling of methanogenesis of acetate using pure cultures of methanogens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

DNA damage-induced cytotoxicity is mediated by the cooperative interaction of phospho-NF-κB p50 and a single nucleotide in the κB-site

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Regulation of putative methyl-sulphide methyltransferases in Methanosarcina acetivorans C2A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

In vivo role of three fused corrinoid/methyl transfer proteins in Methanosarcina acetivorans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Gö1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Cd2+ resistance mechanisms in Methanosarcina acetivorans involve the increase in the coenzyme M content and induction of biofilm synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2014%2F898453

Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24729742

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Carbon monoxide dehydrogenase from Methanosarcina barkeri. Disaggregation, purification, and physicochemical properties of the enzyme

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24729742

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24729742

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2014/898453

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

PubMed publication ID

24729742

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24729742%20AND%20SRC:MED&resulttype=core&format=json