(Q28661091)

3

0 references

Chelsea D. Specht

2

object named as

Chelsea D Specht

0 references

Dennis William Stevenson

4

object named as

Dennis Wm Stevenson

0 references

author name string

Craig F Barrett

1

0 references

Wendy B Zomlefer

5

0 references

Jerrold I Davis

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

6

0 references

language of work or name

English

0 references

publication date

January 2014

0 references

published in

Annals of Botany

0 references

volume

113

0 references

issue

1

0 references

page(s)

119-33

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

The phylogeny and a new classification of the gingers (Zingiberaceae): evidence from molecular data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

The origin and diversification of angiosperms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Angiosperm diversification through time

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Resolving difficult phylogenetic questions: why more sequences are not enough

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

A rapid bootstrap algorithm for the RAxML Web servers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Broad phylogenomic sampling improves resolution of the animal tree of life

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Application of phylogenetic networks in evolutionary studies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Increased taxon sampling greatly reduces phylogenetic error

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Automatic annotation of organellar genomes with DOGMA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

DAMBE: software package for data analysis in molecular biology and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

An index of substitution saturation and its application

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Tracking the development of the petaloid fertile stamen in Canna indica: insights into the origin of androecial petaloidy in the Zingiberales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Phylogeny of the Asparagales based on three plastid and two mitochondrial genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

An overview of the phylogenetic relationships within Epidendroideae inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Early floral development of Heliconia latispatha (Heliconiaceae), a key taxon for understanding the evolution of flower development in the Zingiberales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Angiosperm phylogeny: 17 genes, 640 taxa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Complete generic-level phylogenetic analyses of palms (Arecaceae) with comparisons of supertree and supermatrix approaches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Tablet--next generation sequence assembly visualization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Deciphering ancient rapid radiations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Is sparse taxon sampling a problem for phylogenetic inference?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Unraveling the evolutionary radiation of the families of the Zingiberales using morphological and molecular evidence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Evidence for the involvement of Globosa-like gene duplications and expression divergence in the evolution of floral morphology in the Zingiberales.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Changes in expression pattern of the teosinte branched1-like genes in the Zingiberales provide a mechanism for evolutionary shifts in symmetry across the order.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

TNT, a free program for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

The age of major monocot groups inferred from 800+rbcL sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

The Phylogeny and Classification of the Zingiberales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Spurious 99% bootstrap and jackknife support for unsupported clades.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Phylogenetic Analysis of the Zingiberales Based on rbcL Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Homoplasy, Pollination, and Emerging Complexity During the Evolution of Floral Development in the Tropical Gingers (Zingiberales)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Maximum-likelihood methods for phylogeny estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Phylogeny of the Scitamineae-Morphological and Anatomical Considerations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FAOB%2FMCT264

Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3864734

Identifiability of parameters in MCMC Bayesian inference of phylogeny

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24280362

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/J.1096-0031.2010.00329.X

Identifiers

DOI

10.1093/AOB/MCT264

1 reference

525841

525841

1 reference

1 reference

1 reference