(Q28756667)

2

object named as

Aaron Liston

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author name string

Matthew Parks

3

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David S Gernandt

4

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Rongkun Shen

5

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Todd Mockler

The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group

6

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language of work or name

English

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publication date

November 2008

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published in

Nucleic Acids Research

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volume

36

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page(s)

e122

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issue

19

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Genome-wide profiling and analysis of Arabidopsis siRNAs

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Rapid and accurate pyrosequencing of angiosperm plastid genomes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

ASAP: amplification, sequencing & annotation of plastomes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

VISTA: computational tools for comparative genomics

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Automatic annotation of organellar genomes with DOGMA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

VISTA : visualizing global DNA sequence alignments of arbitrary length

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Glacial refugia: hotspots but not melting pots of genetic diversity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Sequencing breakthroughs for genomic ecology and evolutionary biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Next-generation sequencing transforms today's biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Direct selection of human genomic loci by microarray hybridization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Targeted high-throughput sequencing of tagged nucleic acid samples

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Widespread positive selection in the photosynthetic Rubisco enzyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Constrained hidden Markov models for population-based haplotyping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Chloroplast DNA diversity in populations of wild and cultivated barley

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Transmission genetics of mitochondria and chloroplasts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2577356

Chloroplast microsatellites: new tools for studies in plant ecology and evolution.

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN502

Methods for obtaining and analyzing whole chloroplast genome sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN502

Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations for pinus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN502

Whole-genome sequencing and variant discovery in C. elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN502

The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN502

Microarray-based genomic selection for high-throughput resequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN502

Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

21 January 2018

1 reference

12 December 2020

Next-generation sequencing outpaces expectations

1 reference

12 December 2020

The use of chloroplast DNA polymorphism in studies of gene flow in plants

1 reference

12 December 2020

INFERRING PHYLOGENIES FROM mtDNA VARIATION: MITOCHONDRIAL-GENE TREES VERSUS NUCLEAR-GENE TREES.

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN502

1 reference

441058

441058

1 reference

1 reference

1 reference