(Q28703593)

ORCID Public Data File 2021

Roger Wartell

16

Roger M Wartell

0 references

Thanawadee Preeprem

7

Thanawadee Preeprem

0 references

Chiaolong Hsiao

1

Chiaolong Hsiao

0 references

Shreyas S Athavale

11

Shreyas S Athavale

0 references

J Jared Gossett

12

J Jared Gossett

0 references

author name string

Timothy K Lenz

2

0 references

Po-Yu Fang

4

0 references

Dana M Schneider

5

0 references

Eric J Anderson

6

0 references

Jessica C Bowman

8

0 references

Eric B O'Neill

9

0 references

Lively Lie

10

0 references

Catherine Trippe

13

0 references

Jason Murray

14

0 references

Anton S Petrov

15

0 references

Stephen C Harvey

17

0 references

Nicholas V Hud

18

0 references

Loren Dean Williams

Creative Commons Attribution-NonCommercial 3.0 Unported

19

0 references

language of work or name

English

0 references

publication date

1 March 2013

0 references

published in

Nucleic Acids Research

0 references

volume

41

0 references

issue

5

0 references

page(s)

3373-85

0 references

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

RNA folding and catalysis mediated by iron (II)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

A vestige of a prebiotic bonding machine is functioning within the contemporary ribosome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Crystal structure of the eukaryotic ribosome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Evolution of protein synthesis from an RNA world

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Origin and evolution of the ribosome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

CHARMM: the biomolecular simulation program

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Accurate SHAPE-directed RNA structure determination

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Structure of the 70S ribosome complexed with mRNA and tRNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Scalable molecular dynamics with NAMD

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Protein production by auto-induction in high density shaking cultures

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Tools for the automatic identification and classification of RNA base pairs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Geometric nomenclature and classification of RNA base pairs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Solution structure of a GAAA tetraloop receptor RNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Hierarchy and dynamics of RNA folding

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

The origin of the genetic code

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Evolution of the genetic apparatus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Central Dogma of Molecular Biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Cations in charge: magnesium ions in RNA folding and catalysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

3 June 2018

A rooted net of life.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Ancient machinery embedded in the contemporary ribosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly orders

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Characterization of anti-NF-kappaB RNA aptamer-binding specificity in vitro and in the yeast three-hybrid system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Crawling out of the RNA world

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

A hierarchical model for evolution of 23S ribosomal RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Chapter 14. Analysis of RNA-protein interactions using a yeast three-hybrid system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Quantitative analysis of protein-RNA interactions by gel mobility shift

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

A novel view of gel-shifts: analysis of RNA-protein complexes using a two-color fluorescence dye procedure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

RNA-protein interactions in the yeast three-hybrid system: affinity, sensitivity, and enhanced library screening

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

The contribution of metal ions to the structural stability of the large ribosomal subunit

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

The non-Watson-Crick base pairs and their associated isostericity matrices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Analyzing mRNA-protein complexes using a yeast three-hybrid system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Translation: in retrospect and prospect

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Interpreting the universal phylogenetic tree

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Characterization of functionally active subribosomal particles from Thermus aquaticus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Protein structures sustain evolutionary drift

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Accommodation of amino acid insertions in an alpha-helix of T4 lysozyme. Structural and thermodynamic analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Unusual resistance of peptidyl transferase to protein extraction procedures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Site specific enzymatic cleavage of RNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Binding of Escherichia coli ribosomal proteins to 23S RNA under reconstitution conditions for the 5OS subunit

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Peeling the onion: ribosomes are ancient molecular fossils

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT023

Origin of life: The RNA world

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT023

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT023

RNA Tetraloop Folding Reveals Tension between Backbone Restraints and Molecular Interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT023

Time-resolved RNA SHAPE chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT023

Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT023

Preparation of long templates for RNA in vitro transcription by recursive PCR.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Association of a group I intron with its splice junction in 50S ribosomes: implications for intron toxicity.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597689

Requirement for C-terminal extension to the RNA binding domain for efficient RNA binding by ribosomal protein L2

27 November 2018

1 reference

12 December 2020

RNA–Magnesium–Protein Interactions in Large Ribosomal Subunit

1 reference

12 December 2020

Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6

1 reference

12 December 2020

Ribosome origins: the relative age of 23S rRNA Domains

1 reference

12 December 2020

In vivo recognition of an RNA aptamer by its transcription factor target

1 reference

12 December 2020

Assembly of proteins and 5 S rRNA to transcripts of the major structural domains of 23 S rRNA 1 1Edited by D. E. Draper

1 reference

12 December 2020

Modeling a minimal ribosome based on comparative sequence analysis

1 reference

12 December 2020

Toward ribosomal RNA catalytic activity in the absence of protein

1 reference

12 December 2020

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKT023

1 reference

1 reference

1 reference

PubMed publication ID

23355613

1 reference