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Why does a protein's evolutionary rate vary over time?
scientific article (publication date: 2013)
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title
Why does a protein's evolutionary rate vary over time?
(English)
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author
David J. Lipman
series ordinal
2
object named as
David J Lipman
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author name string
Xiangjun Du
series ordinal
1
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Joshua L Cherry
series ordinal
3
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language of work or name
English
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publication date
2013
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published in
Genome Biology and Evolution
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volume
5
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page(s)
494-503
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issue
3
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cites work
Database resources of the National Center for Biotechnology Information
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PubMed Central
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17 March 2017
CDD: a Conserved Domain Database for the functional annotation of proteins
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PubMed Central
reference URL
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retrieved
17 March 2017
Database resources of the National Center for Biotechnology Information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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17 March 2017
The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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17 March 2017
Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes
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PubMed Central
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17 March 2017
Evolution of genes and genomes on the Drosophila phylogeny
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PubMed Central
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17 March 2017
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
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PubMed Central
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17 March 2017
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
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PubMed Central
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17 March 2017
Thermodynamics of neutral protein evolution
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PubMed Central
reference URL
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17 March 2017
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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17 March 2017
A genomic perspective on protein families
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PubMed Central
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17 March 2017
PAML: a program package for phylogenetic analysis by maximum likelihood
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PubMed Central
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17 March 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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PubMed Central
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17 March 2017
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
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7 April 2017
An examination of the constancy of the rate of molecular evolution
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PubMed Central
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9 May 2017
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.
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PubMed Central
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20 June 2018
Overdispersion of the molecular clock varies between yeast, Drosophila and mammals
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
Splign: algorithms for computing spliced alignments with identification of paralogs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
Should we expect substitution rate to depend on population size?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
The neutral theory is dead. Long live the neutral theory
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
On the overdispersed molecular clock.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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20 June 2018
Lineage effects and the index of dispersion of molecular evolution
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
retrieved
20 June 2018
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
retrieved
27 November 2018
A single determinant dominates the rate of yeast protein evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
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27 November 2018
An analysis of determinants of amino acids substitution rates in bacterial proteins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
retrieved
27 November 2018
Highly expressed genes in yeast evolve slowly.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3622301
retrieved
27 November 2018
On the constancy of the evolutionary rate of cistrons
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23436005
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The current significance and standing of neutral and neutral theories
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23436005
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/GBE/EVT024
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PMCID
3622301
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PubMed ID
23436005
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ResearchGate publication ID
235717425
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