(Q28754812)

4

0 references

Yuri Wolf

1

Yuri I Wolf

0 references

David J. Lipman

5

David J Lipman

0 references

Georgy Karev

3

Georgy P Karev

0 references

Pavel S Novichkov

2

Proceedings of the National Academy of Sciences of the United States of America

Pavel S Novichkov

0 references

language of work or name

English

0 references

publication date

5 May 2009

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published in

0 references

volume

106

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issue

18

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page(s)

7273-80

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cites work

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Distinguishing protein-coding and noncoding genes in the human genome

16 March 2017

1 reference

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The Gene Ontology project in 2008

16 March 2017

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

16 March 2017

1 reference

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Bushes in the tree of life

16 March 2017

1 reference

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An integrated view of protein evolution

16 March 2017

1 reference

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The altered evolutionary trajectories of gene duplicates

16 March 2017

1 reference

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The ring of life provides evidence for a genome fusion origin of eukaryotes

16 March 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

16 March 2017

1 reference

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A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

16 March 2017

1 reference

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The origin of new genes: glimpses from the young and old

16 March 2017

1 reference

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GoMiner: a resource for biological interpretation of genomic and proteomic data

16 March 2017

1 reference

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The relationship of protein conservation and sequence length

16 March 2017

1 reference

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Birth and death of protein domains: a simple model of evolution explains power law behavior

16 March 2017

1 reference

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Lateral gene transfer and the nature of bacterial innovation

16 March 2017

1 reference

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A genomic perspective on protein families

16 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

16 March 2017

1 reference

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The rapid generation of mutation data matrices from protein sequences

16 March 2017

1 reference

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The Ka/Ks ratio: diagnosing the form of sequence evolution

16 March 2017

2 references

Crossref

https://api.crossref.org/works/10.1073/PNAS.0901808106

22 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Eukaryotic evolution, changes and challenges

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Database resources of the National Center for Biotechnology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

7 April 2017

Biochemical evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Natural history and evolutionary principles of gene duplication in fungi

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Evolutionarily conserved genes preferentially accumulate introns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

The UCSC genome browser database: update 2007.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Evolutionary systems biology: links between gene evolution and function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Coping with the quantitative genomics 'elephant': the correlation between the gene dispensability and evolution rate

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Why highly expressed proteins evolve slowly

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Functional genomic analysis of the rates of protein evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

How introns influence and enhance eukaryotic gene expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

The role of lineage-specific gene family expansion in the evolution of eukaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Genome and protein evolution in eukaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

3 June 2018

Evolution of novel genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

From complete genomes to measures of substitution rate variability within and between proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

The power-law distribution of gene family size is driven by the pseudogenisation rate's heterogeneity between gene families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Cryptic complexity captured: the Nematostella genome reveals its secrets

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Assessment of phylogenomic and orthology approaches for phylogenetic inference

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

A single determinant dominates the rate of yeast protein evolution

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Highly expressed genes in yeast evolve slowly.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Protein dispensability and rate of evolution

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

Do essential genes evolve slowly?

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2666616

27 November 2018

1 reference

12 December 2020

Unifying measures of gene function and evolution

1 reference

PubMed

12 December 2020

Inverse relationship between evolutionary rate and age of mammalian genes

1 reference

PubMed

12 December 2020

Converging on a general model of protein evolution

1 reference

PubMed

12 December 2020

Identifiers

DOI

10.1073/PNAS.0901808106

1 reference

ADS bibcode

2009PNAS..106.7273W

0 references

1 reference

1 reference

PubMed publication ID

19351897

1 reference