(Q28728273)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

title

Structural constraints identified with covariation analysis in ribosomal RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

author name string

Lei Shang

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Weijia Xu

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Stuart Ozer

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

language of work or name

English

0 references

publication date

19 June 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

page(s)

e39383

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 February 2020

copyright license

start time

19 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3378556

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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17 March 2017

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Measuring covariation in RNA alignments: physical realism improves information measures

17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Structure of the SRP19 RNA complex and implications for signal recognition particle assembly

17 March 2017

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17 March 2017

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Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

17 March 2017

1 reference

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Structure of the 30S ribosomal subunit

17 March 2017

1 reference

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

17 March 2017

1 reference

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Crystal structure of the ribonucleoprotein core of the signal recognition particle

17 March 2017

1 reference

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Phylogenetic analysis of tmRNA secondary structure.

17 March 2017

1 reference

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Crystal structure of a group I ribozyme domain: principles of RNA packing

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations

17 March 2017

1 reference

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Identification of direct residue contacts in protein-protein interaction by message passing

6 April 2017

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rCAD: A Novel Database Schema for the Comparative Analysis of RNA.

7 April 2017

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PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

3 June 2018

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Direct correlation analysis improves fold recognition

3 June 2018

1 reference

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Covariant Evolutionary Event Analysis for Base Interaction Prediction Using a Relational Database Management System for RNA.

3 June 2018

1 reference

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What recent ribosome structures have revealed about the mechanism of translation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Memory efficient folding algorithms for circular RNA secondary structures

3 June 2018

1 reference

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Crystal structure of a bacterial ribonuclease P RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

An active role for tRNA in decoding beyond codon:anticodon pairing

3 June 2018

1 reference

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Networks of coevolving sites in structural and functional domains of serpin proteins.

3 June 2018

1 reference

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Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs.

3 June 2018

1 reference

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Chemical specificity of nucleic acids and mechanism of their enzymatic degradation

3 June 2018

1 reference

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Crystal structure of a self-splicing group I intron with both exons

3 June 2018

1 reference

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A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.

3 June 2018

1 reference

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Some recent studies on the composition and structure of nucleic acids

3 June 2018

1 reference

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The accuracy of ribosomal RNA comparative structure models

3 June 2018

1 reference

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Exploring a phylogenetic approach for the detection of correlated substitutions in proteins.

3 June 2018

1 reference

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RNA secondary structure prediction using stochastic context-free grammars and evolutionary history

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Inferring the conformation of RNA base pairs and triples from patterns of sequence variation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Secondary structure model for 23S ribosomal RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Codon--anticodon pairing: the wobble hypothesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Structure of yeast phenylalanine tRNA at 3 Å resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Three-dimensional structure of yeast phenylalanine transfer RNA at 3. 0Å resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Comparative anatomy of 16-S-like ribosomal RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Higher order structure in ribosomal RNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Structural conventions for group I introns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA--a review

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

The secondary structure of the 7SL RNA in the signal recognition particle: functional implications.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Inferring consensus structure from nucleic acid sequences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

Identification of base-triples in RNA using comparative sequence analysis.

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

A model-based approach for detecting coevolving positions in a molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

Influence of conservation on calculations of amino acid covariance in multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

A functional ribosomal RNA tertiary structure involves a base triple interaction

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378556

5S RNA secondary structure

27 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0039383

Crystal structure of the RNA component of bacterial ribonuclease P

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22724009

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detecting the coevolution of biosequences--an example of RNA interaction prediction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22724009

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0039383

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

PubMed publication ID

22724009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22724009%20AND%20SRC:MED&resulttype=core&format=json