(Q28728793)

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Winding up the molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation

scientific article (publication date: 28 March 2012)

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

Winding up the molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

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Jesús Gómez-Zurita

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

Carmelo Andújar

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Carmelo Andújar

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ORCID Public Data File 2021

author name string

José Serrano

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

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28 March 2012

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Europe PubMed Central

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27 January 2020

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

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40

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

Fast and slow implementations of relaxed-clock methods show similar patterns of accuracy in estimating divergence times

1 reference

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17 March 2017

Variation in DNA substitution rates among lineages erroneously inferred from simulated clock-like data

1 reference

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17 March 2017

Ancient origin of a Western Mediterranean radiation of subterranean beetles

1 reference

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17 March 2017

Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks

1 reference

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17 March 2017

Ancient associations of aquatic beetles and tank bromeliads in the Neotropical forest canopy

1 reference

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17 March 2017

jModelTest: phylogenetic model averaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

Relaxed phylogenetics and dating with confidence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

Molecular clocks: four decades of evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

The modern molecular clock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

The evolutionary history of the genus Timarcha (Coleoptera, Chrysomelidae) inferred from mitochondrial COII gene and partial 16S rDNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

Slightly Deleterious Mutant Substitutions in Evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

17 March 2017

Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

7 April 2017

Multiple alignment of DNA sequences with MAFFT

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

7 April 2017

Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

7 April 2017

Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

7 April 2017

Time-dependent rates of molecular evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Exploring patterns and extent of bias in estimating divergence time from mitochondrial DNA sequence data in a particular lineage: a case study of salamanders (order Caudata).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Late Miocene diversification of the genus Hydrochus (Coleoptera, Hydrochidae) in the west Mediterranean area

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

The evolution of unisexuality in Calligrapha leaf beetles: molecular and ecological insights on multiple origins via interspecific hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Origin and diversification of hindwingless Damaster ground beetles within the Japanese islands as deduced from mitochondrial ND5 gene sequences (Coleoptera, Carabidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Low substitution rates in mitochondrial DNA in Mediterranean carabid beetles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

3 June 2018

Molecular phylogeny of the tribe Sphodrini (Coleoptera: Carabidae) based on mitochondrial and nuclear markers

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Evolution and diversification of the forest and hypogean ground-beetle genus Trechus in the Canary Islands.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Taxon sampling effects in molecular clock dating: an example from the African Restionaceae

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Phylogeny and evolution of Digitulati ground beetles (Coleoptera, Carabidae) inferred from mitochondrial ND5 gene sequences

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Mode of morphological differentiation in the Latitarsi-ground beetles (Coleoptera, Carabidae) of the world inferred from a phylogenetic tree of mitochondrial ND5 gene sequences.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Recent diversification rates in North American tiger beetles estimated from a dated mtDNA phylogenetic tree

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Mind the gaps: evidence of bias in estimates of multiple sequence alignments.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-40

21 January 2018

Incongruence of mitochondrial and nuclear gene trees in the Carabid beetles Ohomopterus.

1 reference

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27 November 2018

Formation of the Japanese Carabina fauna inferred from a phylogenetic tree of mitochondrial ND5 gene sequences (Coleoptera, carabidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368785

27 November 2018

Identifiers

10.1186/1471-2148-12-40

2 references

Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-12-40

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22455387%20AND%20SRC:MED&resulttype=core&format=json

27 January 2020

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