(Q28740926)

English

The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences

scientific article (publication date: 2011)

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scholarly article

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The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences (English)

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David Alvarez-Ponce

1

object named as

David Alvarez-Ponce

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James O. McInerney

2

object named as

James O McInerney

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language of work or name

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publication date

2011

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Genome Biology and Evolution

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3

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0

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782-90

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copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

3 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

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Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Sequence context-specific profiles for homology searching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

The BioGRID Interaction Database: 2008 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Supertrees disentangle the chimerical origin of eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Towards a proteome-scale map of the human protein–protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Binding properties and evolution of homodimers in protein-protein interaction networks

1 reference

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17 March 2017

The ring of life provides evidence for a genome fusion origin of eukaryotes

1 reference

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17 March 2017

A gene atlas of the mouse and human protein-encoding transcriptomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

EnsMart: a generic system for fast and flexible access to biological data

1 reference

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17 March 2017

Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets

1 reference

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17 March 2017

On the origin of mitosing cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

The evolutionary fate and consequences of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Gene ontology: tool for the unification of biology

1 reference

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17 March 2017

Archean Molecular Fossils and the Early Rise of Eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

17 March 2017

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

7 April 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

7 April 2017

McKusick's Online Mendelian Inheritance in Man (OMIM)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

7 April 2017

Eukaryotic evolution, changes and challenges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

7 April 2017

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

7 April 2017

Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: a network-level analysis of selective pressures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

The Mouse Genome Database (MGD): mouse biology and model systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Evolution of protein complexes by duplication of homomeric interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Evolutionary systems biology: links between gene evolution and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Genomics and the irreducible nature of eukaryote cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Evolution of the yeast protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (mitochondria and hydrogenosomes), and their heterotrophic lifestyle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Where is the root of the universal tree of life?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Genomic evidence for two functionally distinct gene classes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Archaebacteria and the origin of the eukaryotic cytoplasm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163467

3 June 2018

Gene essentiality, gene duplicability and protein connectivity in human and mouse.

1 reference

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27 November 2018

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1 reference

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27 November 2018

The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

1 reference

https://pubmed.ncbi.nlm.nih.gov/21795752

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/21795752

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21795752

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GBE/EVR073

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