(Q28744013)

8

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Franca Fraternali

object named as

Franca Fraternali

6

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author name string

Ruth B McCole

1

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Noeleen B Loughran

2

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Mandeep Chahal

3

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Luis P Fernandes

4

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Mary J O'Connell

RETRACTED: VMA21 deficiency causes an autophagic myopathy by compromising V-ATPase activity and lysosomal acidification

7

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language of work or name

English

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publication date

May 2011

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published in

Evolution

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volume

65

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issue

5

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page(s)

1413-27

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

RNA-based gene duplication: mechanistic and evolutionary insights

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Genomic imprinting in mammals: emerging themes and established theories

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Comparative analyses of genomic imprinting and CpG island-methylation in mouse Murr1 and human MURR1 loci revealed a putative imprinting control region in mice

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Homology-extended sequence alignment

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

The Jalview Java alignment editor

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Different evolutionary patterns between young duplicate genes in the human genome

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

MrBayes 3: Bayesian phylogenetic inference under mixed models

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

BLAT—The BLAST-Like Alignment Tool

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Selection in the evolution of gene duplications

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

An abundance of X-linked genes expressed in spermatogonia

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Molecular phylogenetics and the origins of placental mammals

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Comparative protein structure modeling of genes and genomes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Preservation of duplicate genes by complementary, degenerative mutations

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

PAML: a program package for phylogenetic analysis by maximum likelihood

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Mouse U2af1-rs1 is a neomorphic imprinted gene

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

VMD: visual molecular dynamics

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

The rapid generation of mutation data matrices from protein sequences

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Turning a hobby into a job: how duplicated genes find new functions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Human L1 retrotransposition: cis preference versus trans complementation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Human LINE retrotransposons generate processed pseudogenes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Transcription is required for establishment of germline methylation marks at imprinted genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Unwitting hosts fall victim to imprinting

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Targeted suppression of MCT-1 attenuates the malignant phenotype through a translational mechanism

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

The origin of adaptive phenotypes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

An epigenetic approach to cancer etiology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Tracking the connection between evolutionary and functional shifts using the fungal lipase/feruloyl esterase A family

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Length-dependent prediction of protein intrinsic disorder.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Evolutionary fate of retroposed gene copies in the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

A novel variant of Inpp5f is imprinted in brain, and its expression is correlated with differential methylation of an internal CpG island

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

The MCT-1 oncogene product impairs cell cycle checkpoint control and transforms human mammary epithelial cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Adaptive molecular evolution in the opsin genes of rapidly speciating cichlid species

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Extensive gene traffic on the mammalian X chromosome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Identification of novel imprinted genes in a genome-wide screen for maternal methylation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107425

Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA gene family

3 June 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Characterizing positive and negative selection and their phylogenetic effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

MCT-1 protein interacts with the cap complex and modulates messenger RNA translational profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Evolutionary rates of duplicate genes in fish and mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Origins of new male germ-line functions from X-derived autosomal retrogenes in the mouse.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

High rate of chimeric gene origination by retroposition in plant genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Genomic Background Drives the Divergence of Duplicated Amylase Genes at Synonymous Sites in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Genomic background predicts the fate of duplicated genes: evidence from the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Extensive structural renovation of retrogenes in the evolution of the Populus genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Not Born Equal: Increased Rate Asymmetry in Relocated and Retrotransposed Rodent Gene Duplicates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Positive darwinian selection at the imprinted MEDEA locus in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1558-5646.2010.01213.X

Transcriptional promiscuity in testes

21 January 2018

1 reference

12 December 2020

Postmeiotic sex chromatin in the male germline of mice

1 reference

12 December 2020

The evolutionary fate of recently duplicated retrogenes in mice

1 reference

12 December 2020

MCT-1 oncogene downregulates p53 and destabilizes genome structure in the response to DNA double-strand damage

1 reference

12 December 2020