(Q28748516)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

author name string

Sarah Mathews

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Mark D Clements

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

language of work or name

English

0 references

publication date

1 February 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

Philosophical Transactions of the Royal Society B

16 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

volume

365

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

issue

1539

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

page(s)

383-395

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

Phylogeny of seed plants based on evidence from eight genes

16 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Bayesian analysis of amino acid substitution models

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Genomics, biogeography, and the diversification of placental mammals

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

ESTimating plant phylogeny: lessons from partitioning

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Archaefructus--angiosperm precursor or specialized early angiosperm?

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

MrBayes 3: Bayesian phylogenetic inference under mixed models

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Archaefructaceae, a new basal angiosperm family

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

MRBAYES: Bayesian inference of phylogenetic trees

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Progress in understanding angiosperm history, success, and relationships: Darwin's abominably "perplexing phenomenon"

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Inferring species trees from gene trees: a phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Evolutionary trees from DNA sequences: A maximum likelihood approach

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

An improved general amino acid replacement matrix

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

APE: Analyses of Phylogenetics and Evolution in R language

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

An approximately unbiased test of phylogenetic tree selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Is a new and general theory of molecular systematics emerging?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Phylogenetic relationships of conifers inferred from partial 28S rRNA gene sequences

9 May 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

20 June 2018

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Relationships among seed plants inferred from highly conserved genes: sorting conflicting phylogenetic signals among ancient lineages

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Distinguishing angiophytes from the earliest angiosperms: A Lower Cretaceous (Valanginian-Hauterivian) fruit-like reproductive structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Bennettitales from the Grisethorpe Bed (Middle Jurassic) at Cayton Bay, Yorkshire, UK.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Early Cretaceous mesofossils from Portugal and eastern North America related to the Bennettitales-Erdtmanithecales-Gnetales group

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Seed ferns from the late Paleozoic and Mesozoic: Any angiosperm ancestors lurking there?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Reconstructing the ancestral angiosperm flower and its initial specializations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Genome beginnings: rooting the tree of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

A mixed branch length model of heterotachy improves phylogenetic accuracy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Phase-contrast X-ray microtomography links Cretaceous seeds with Gnetales and Bennettitales

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Inconsistency of phylogenetic estimates from concatenated data under coalescence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Discordance of species trees with their most likely gene trees.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Angiosperm divergence times: the effect of genes, codon positions, and time constraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The root of the angiosperms revisited

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The evolutionary split of Pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Seed plant phylogeny: Demise of the anthophyte hypothesis?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Duplicate genes and the root of angiosperms, with an example using phytochrome sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny.

20 June 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Phylogenetic mixtures on a single tree can mimic a tree of another topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Evolution of pharmacologic specificity in the pregnane X receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Multigene analyses identify the three earliest lineages of extant flowering plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Phylogeny reconstruction: the role of morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Parsimony, likelihood, and the role of models in molecular phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

MtArt: A New Model of Amino Acid Replacement for Arthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

The genetic code can cause systematic bias in simple phylogenetic models

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2838261

Introduction to the Darwin special issue: The abominable mystery1

27 November 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2009.0233

Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family

21 January 2018

1 reference

12 December 2020

High-efficiency thermal asymmetric interlaced PCR for amplification of unknown flanking sequences

1 reference

12 December 2020

Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

1 reference

12 December 2020

Amino acid vs. nucleotide characters: challenging preconceived notions

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSTB.2009.0233

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20047866%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

20047866

1 reference