(Q28750247)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19936291%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome (English)

1 reference

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12 February 2020

2

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12 February 2020

Dan Nettleton

8

1 reference

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12 February 2020

Patrick S Schnable

9

1 reference

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12 February 2020

1

Sanzhen Liu

1 reference

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12 February 2020

author name string

Tieming Ji

3

1 reference

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12 February 2020

Kai Ying

4

1 reference

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12 February 2020

Haiyan Wu

5

1 reference

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12 February 2020

Ho Man Tang

6

1 reference

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12 February 2020

Yan Fu

7

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12 February 2020

language of work or name

English

0 references

publication date

20 November 2009

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12 February 2020

1 reference

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12 February 2020

volume

5

1 reference

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12 February 2020

issue

11

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12 February 2020

page(s)

e1000733

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Creative Commons Attribution 4.0 International

12 February 2020

copyright license

start time

20 November 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The B73 Maize Genome: Complexity, Diversity, and Dynamics

1 reference

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Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

16 March 2017

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Genome-wide mutagenesis of Zea mays L. using RescueMu transposons

16 March 2017

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Active genes are tri-methylated at K4 of histone H3

16 March 2017

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A high-resolution recombination map of the human genome

7 April 2017

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

7 April 2017

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

7 April 2017

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

7 April 2017

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Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons

7 April 2017

1 reference

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Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

The art and design of genetic screens: maize.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Role of RAD51 in the repair of MuDR-induced double-strand breaks in maize (Zea mays L.).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Histone H3 acetylation and H3 K4 methylation define distinct chromatin regions permissive for transgene expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

An RNA-dependent RNA polymerase is required for paramutation in maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Steady-state transposon mutagenesis in inbred maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Linkage mapping of 1454 new maize candidate gene Loci

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Distribution of Activator (Ac) throughout the maize genome for use in regional mutagenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Molecular analysis of high-copy insertion sites in maize.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Maize genome sequencing by methylation filtration

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

DNA sequence-based "bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Maize-targeted mutagenesis: A knockout resource for maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

An active DNA transposon family in rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Genetic, physical, and informatics resources for maize. On the road to an integrated map.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

3 June 2018

1 reference

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Compositional gradients in Gramineae genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Transposon tagging in maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Plant transposable elements: where genetics meets genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Maize Mu transposons are targeted to the 5' untranslated region of the gl8 gene and sequences flanking Mu target-site duplications exhibit nonrandom nucleotide composition throughout the genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Identification of transposon-tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Insertion site preferences of the P transposable element in Drosophila melanogaster

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Transposable element contributions to plant gene and genome evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

The late developmental pattern of Mu transposon excision is conferred by a cauliflower mosaic virus 35S -driven MURA cDNA in transgenic maize

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Nested retrotransposons in the intergenic regions of the maize genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Gene disruptions using P transposable elements: an integral component of the Drosophila genome project

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

A strategy for assembling the maize (Zea mays L.) genome

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

Robust Locally Weighted Regression and Smoothing Scatterplots

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

High-resolution single-copy gene fluorescence in situ hybridization and its use in the construction of a cytogenetic map of maize chromosome 9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

A general approach to single-nucleotide polymorphism discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

Site-selected transposon mutagenesis at the hcf106 locus in maize.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

Fast and high precision algorithms for optimization in large-scale genomic problems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000733

Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Constructing large-scale genetic maps using an evolutionary strategy algorithm.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2774946

Characterization of bz1 mutants isolated from mutator stocks with high and low numbers of Mu1 elements

27 November 2018

1 reference

12 December 2020

The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets

1 reference

12 December 2020

Local Rates of Recombination Are Positively Correlated with GC Content in the Human Genome

1 reference

12 December 2020

Access to the maize genome: an integrated physical and genetic map

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1000733

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19936291%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19936291%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

PubMed publication ID

19936291

1 reference