(Q30946313)

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Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons

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scholarly article

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Europe PubMed Central

PMC publication ID

20 August 2017

Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons (English)

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

retrotransposon

0 references

James A. Birchler

12

object named as

James A Birchler

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

author name string

Thomas K Wolfgruber

1

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Anupma Sharma

2

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Kevin L Schneider

3

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Europe PubMed Central

PMC publication ID

20 August 2017

Patrice S Albert

4

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Dal-Hoe Koo

5

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Jinghua Shi

6

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Zhi Gao

7

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Fangpu Han

8

1 reference

Europe PubMed Central

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20 August 2017

Hyeran Lee

9

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Ronghui Xu

10

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Jamie Allison

11

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

Jiming Jiang

13

1 reference

Europe PubMed Central

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20 August 2017

R Kelly Dawe

14

1 reference

Europe PubMed Central

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20 August 2017

Gernot G Presting

15

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Europe PubMed Central

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20 August 2017

publication date

20 November 2009

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Europe PubMed Central

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20 August 2017

1 reference

Europe PubMed Central

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20 August 2017

5

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Europe PubMed Central

PMC publication ID

20 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

e1000743

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

copyright license

Creative Commons Attribution 4.0 International

20 November 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

JunctionViewer: customizable annotation software for repeat-rich genomic regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

The B73 Maize Genome: Complexity, Diversity, and Dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Intergenic locations of rice centromeric chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Chromodomains direct integration of retrotransposons to heterochromatin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Physical and genetic structure of the maize genome reflects its complex evolutionary history

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Retroelement genome painting: cytological visualization of retroelement expansions in the genera Zea and Tripsacum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Happy together: the life and times of Ty retrotransposons and their hosts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Close split of sorghum and maize genome progenitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Sequencing of a rice centromere uncovers active genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

A molecular view of plant centromeres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Gondwanan evolution of the grass alliance of families (Poales).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Conserved organization of centromeric chromatin in flies and humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

The centromere paradox: stable inheritance with rapidly evolving DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

DNA sequence evidence for the segmental allotetraploid origin of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

The MITE family heartbreaker (Hbr): molecular markers in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

The paleontology of intergene retrotransposons of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Oat-maize chromosome addition lines: a new system for mapping the maize genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

14 July 2018

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000743

21 January 2018

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000743

21 January 2018

Distinct chromosomal distributions of highly repetitive sequences in maize.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000743

21 January 2018

Histone modifications associated with both A and B chromosomes of maize.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000743

21 January 2018

Loading of Arabidopsis centromeric histone CENH3 occurs mainly during G2 and requires the presence of the histone fold domain.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000743

21 January 2018

Transposon Display identifies individual transposable elements in high copy number lines.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

25 November 2018

Retrotransposon-related DNA sequences in the centromeres of grass chromosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2776974

25 November 2018

Application of fiber-FISH in physical mapping of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956743

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956743

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956743

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maize centromeres: organization and functional adaptation in the genetic background of oat

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956743

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Access to the maize genome: an integrated physical and genetic map

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956743

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers

1 reference

https://pubmed.ncbi.nlm.nih.gov/19956743

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1000743

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

release_fkvb6rrhefdxvfe7aqn3mmnq7e

1 reference

https://api.fatcat.wiki/v0/release/fkvb6rrhefdxvfe7aqn3mmnq7e

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

ResearchGate publication ID

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