(Q79828659)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18000683%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

title

Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity (English)

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26 December 2019

1

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26 December 2019

author name string

Gernot G Presting

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18000683%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

publication date

14 November 2007

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18000683%20AND%20SRC:MED&resulttype=core&format=json

Molecular Genetics and Genomics

26 December 2019

published in

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26 December 2019

volume

279

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26 December 2019

issue

2

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26 December 2019

page(s)

133-147

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https://scigraph.springernature.com/pub.10.1007/s00438-007-0302-5

26 December 2019

exact match

0 references

cites work

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12 December 2020

Ty3/Gypsy retrotransposons: description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data

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12 December 2020

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

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12 December 2020

Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species

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12 December 2020

Gondwanan evolution of the grass alliance of families (Poales).

1 reference

12 December 2020

Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction.

1 reference

12 December 2020

The paleontology of intergene retrotransposons of maize.

1 reference

12 December 2020

Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats

1 reference

12 December 2020

Variability, recombination, and mosaic evolution of the barley BARE-1 retrotransposon.

1 reference

12 December 2020

Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L

1 reference

12 December 2020

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

12 December 2020

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

1 reference

12 December 2020

Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions

1 reference

12 December 2020

The rapid generation of mutation data matrices from protein sequences

1 reference

12 December 2020

DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences.

1 reference

12 December 2020

GATA: a graphic alignment tool for comparative sequence analysis

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12 December 2020

Retroelements and formation of chimeric retrogenes

1 reference

12 December 2020

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

1 reference

12 December 2020

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

1 reference

12 December 2020

Centromere-encoded RNAs are integral components of the maize kinetochore.

1 reference

12 December 2020

Retrotransposon-related DNA sequences in the centromeres of grass chromosomes.

1 reference

12 December 2020

Sequence comparisons of retroviral proteins: relative rates of change and general phylogeny

1 reference

12 December 2020

Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres.

1 reference

12 December 2020

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

12 December 2020

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

12 December 2020

A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes.

1 reference

12 December 2020

Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice

1 reference

12 December 2020

ProtTest: selection of best-fit models of protein evolution

1 reference

12 December 2020

Athila, a new retroelement from Arabidopsis thaliana

1 reference

12 December 2020

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

1 reference

12 December 2020

Maize centromeres: organization and functional adaptation in the genetic background of oat

1 reference

12 December 2020

A conserved repetitive DNA element located in the centromeres of cereal chromosomes

1 reference

12 December 2020

A cereal centromeric sequence.

1 reference

12 December 2020

Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses

1 reference

12 December 2020

Diversity of centromeric repeats in two closely related wild rice species, Oryza officinalis and Oryza rhizomatis.

1 reference

12 December 2020

Retrotransposon evolution in diverse plant genomes

1 reference

12 December 2020

Evolution of the angiosperms: calibrating the family tree

1 reference

12 December 2020

Characterization of the centromere and peri-centromere retrotransposons in Brassica rapa and their distribution in related Brassica species

1 reference

12 December 2020

ATV: display and manipulation of annotated phylogenetic trees

1 reference

12 December 2020

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.

1 reference

12 December 2020

TreeView: an application to display phylogenetic trees on personal computers

1 reference

12 December 2020

CD-Search: protein domain annotations on the fly

1 reference

12 December 2020

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

1 reference

12 December 2020

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

1 reference

12 December 2020

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

1 reference

12 December 2020

Template switching can create complex LTR retrotransposon insertions in Triticeae genomes.

1 reference

12 December 2020

Plant retrotransposons

1 reference

12 December 2020

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

1 reference

12 December 2020

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

1 reference

12 December 2020

Phylogenomic analysis of chromoviruses

1 reference

12 December 2020

Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons

1 reference

12 December 2020

10.1007/S00438-007-0302-5

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18000683%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

1 reference