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New metrics for comparative genomics
scientific article (publication date: October 2006)
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scholarly article
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review article
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Europe PubMed Central
title
New metrics for comparative genomics
(English)
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main subject
comparative genomics
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based on heuristic
inferred from title
author
Eugene Kolker
series ordinal
2
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Eugene Kolker
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Michael Y. Galperin
object named as
Michael Y Galperin
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language of work or name
English
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publication date
October 2006
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published in
Current Opinion in Biotechnology
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volume
17
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page(s)
440-7
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issue
5
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cites work
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Structural similarity of loops in protein families: toward the understanding of protein evolution
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Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus
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A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
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An archaeal genomic signature
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Twilight zone of protein sequence alignments
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Essential genes on metabolic maps.
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Understanding the cell in terms of structure and function: insights from structural genomics.
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3 June 2018
Structural classification of bacterial response regulators: diversity of output domains and domain combinations
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3 June 2018
A hidden metabolic pathway exposed
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Extraction of phylogenetic network modules from the metabolic network
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Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.
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Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400.
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3 June 2018
Evolutionary plasticity of protein families: coupling between sequence and structure variation
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3 June 2018
Highways of gene sharing in prokaryotes
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3 June 2018
Towards a genome-based taxonomy for prokaryotes
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3 June 2018
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764326
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3 June 2018
Genomic insights that advance the species definition for prokaryotes
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3 June 2018
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations
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3 June 2018
Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764326
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3 June 2018
'Conserved hypothetical' proteins: prioritization of targets for experimental study
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PubMed Central
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3 June 2018
Analysis of protein homology by assessing the (dis)similarity in protein loop regions
1 reference
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3 June 2018
Genome analysis of marine photosynthetic microbes and their global role
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3 June 2018
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3 June 2018
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3 June 2018
Multiple formaldehyde oxidation/detoxification pathways in Burkholderia fungorum LB400.
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3 June 2018
Scaling laws in the functional content of genomes
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3 June 2018
Missing genes in metabolic pathways: a comparative genomics approach
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3 June 2018
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
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3 June 2018
The value of complete microbial genome sequencing (you get what you pay for).
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3 June 2018
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
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3 June 2018
Powers and pitfalls in sequence analysis: the 70% hurdle
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3 June 2018
Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum
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3 June 2018
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
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3 June 2018
Distribution of protein folds in the three superkingdoms of life.
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3 June 2018
Analogous enzymes: independent inventions in enzyme evolution
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3 June 2018
Systems for categorizing functions of gene products.
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3 June 2018
Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model
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12 December 2020
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Identifiers
DOI
10.1016/J.COPBIO.2006.08.007
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1764326
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PubMed ID
16978854
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ResearchGate publication ID
6815099
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