(Q28768106)

6 July 2017

title

Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis (English)

1 reference

6 July 2017

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Frédéric J J Chain

1

1 reference

6 July 2017

Ben J Evans

series ordinal

2

1 reference

6 July 2017

language of work or name

English

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publication date

28 April 2006

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6 July 2017

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6 July 2017

volume

2

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6 July 2017

issue

4

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6 July 2017

page(s)

e56

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Creative Commons Attribution 4.0 International

6 July 2017

copyright license

start time

28 April 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Different evolutionary patterns between young duplicate genes in the human genome

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Role of duplicate genes in genetic robustness against null mutations

16 March 2017

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16 March 2017

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Selection in the evolution of gene duplications

16 March 2017

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The evolutionary fate and consequences of duplicate genes

16 March 2017

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The role of population size, pleiotropy and fitness effects of mutations in the evolution of overlapping gene functions

16 March 2017

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Genome evolution in polyploids

16 March 2017

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16 March 2017

12 December 2020

On the possibility of constructive neutral evolution

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Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus

16 March 2017

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Preservation of duplicate genes by complementary, degenerative mutations

16 March 2017

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MODELTEST: testing the model of DNA substitution

16 March 2017

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PAML: a program package for phylogenetic analysis by maximum likelihood

16 March 2017

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How often do duplicated genes evolve new functions?

16 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes

16 March 2017

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The origins of genome complexity

16 March 2017

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Genome-scale approaches to resolving incongruence in molecular phylogenies

7 April 2017

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Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

7 April 2017

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7 April 2017

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Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

27 November 2018

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Recent segmental duplications in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Zebrafish hox clusters and vertebrate genome evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Positive Darwinian selection after gene duplication in primate ribonuclease genes

7 April 2017

1 reference

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Enzyme recruitment in evolution of new function

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The probability of duplicate gene preservation by subfunctionalization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Role of positive selection in the retention of duplicate genes in mammalian genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Why highly expressed proteins evolve slowly

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Gene factories, microfunctionalization and the evolution of gene families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Expression divergence between duplicate genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Site-to-site variation of synonymous substitution rates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

CpG mutation rates in the human genome are highly dependent on local GC content

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Epigenetic phenomena and the evolution of plant allopolyploids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Sequence Divergence, Functional Constraint, and Selection in Protein Evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Asymmetric sequence divergence of duplicate genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

GeneMerge—post-genomic analysis, data mining, and hypothesis testing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Understanding mechanisms of novel gene expression in polyploids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The neutral theory in the genomic era.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Comparative genomics provides evidence for an ancient genome duplication event in fish

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Genome duplication, divergent resolution and speciation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Locating regions of differential variability in DNA and protein sequences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The structural basis of molecular adaptation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Extent of genomic rearrangement after genome duplication in yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Evolution of genetic redundancy.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Gen(om)e duplications in the evolution of early vertebrates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Detecting heterogeneity of substitution along DNA and protein sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Invasion and maintenance of a gene duplication

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Comparative linkage maps of the rice and maize genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Developmental and hormonal regulation of the Xenopus liver-type arginase gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Evolutionary change of duplicate genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Ancient linkage groups and frozen accidents

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Time for acquiring a new gene by duplication

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Globin evolution in the genus Xenopus: comparative analysis of cDNAs coding for adult globin polypeptides of Xenopus borealis and Xenopus tropicalis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The recruitment of crystallins: new functions precede gene duplication.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Expression of a novel FGF in the Xenopus embryo. A new candidate inducing factor for mesoderm formation and anteroposterior specification.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Loss of duplicate gene expression after polyploidisation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Evolution of the differential regulation of duplicate genes after polyploidization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Polymorphism and loss of duplicate gene expression: a theoretical study with application of tetraploid fish

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Albumin Phylogeny for Clawed Frogs ( Xenopus )

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Do disparate mechanisms of duplication add similar genes to the genome?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Duplicate genes increase gene expression diversity within and between species.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Epigenetic silencing may aid evolution by gene duplication

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Estrogen receptors in Xenopus: duplicate genes, splice variants, and tissue-specific expression

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Highly expressed genes in yeast evolve slowly.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Evolutionary rates of duplicate genes in fish and mammals.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Differential selection after duplication in mammalian developmental genes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Extensive duplication and reshuffling in the Arabidopsis genome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

The evolution of functionally novel proteins after gene duplication.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449897

Polyploidy: recurrent formation and genome evolution

27 November 2018

1 reference

12 December 2020

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

1 reference

12 December 2020

Evolution of RAG-1 in polyploid clawed frogs

1 reference

12 December 2020

A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate

1 reference

12 December 2020

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

1 reference

12 December 2020

ANALYZING TABLES OF STATISTICAL TESTS

1 reference

12 December 2020

Globins: A Case Study in Molecular Phylogeny

1 reference

12 December 2020

Evolution of duplicate genes in a tetraploid animal, Xenopus laevis

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.0020056

Identifiers

DOI

1 reference

6 July 2017

1 reference

6 July 2017

1 reference