(Q28950439)

English

Reproducibility of computational workflows is automated using continuous analysis

scientific article (publication date: 13 March 2017)

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scholarly article

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Reproducibility of computational workflows is automated using continuous analysis (English)

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reproducibility

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Casey S. Greene

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Casey S Greene

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Brett K. Beaulieu-Jones

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Brett K Beaulieu-Jones

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Casey S. Greene

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Casey S. Greene

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author name string

Brett K. Beaulieu-Jones

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publication date

13 March 2017

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April 2017

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full work available at URL

https://www.nature.com/articles/nbt.3780

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Nature Biotechnology

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35

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4

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342-346

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342

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describes a project that uses

Jupyter notebook file

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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6103790/

Reproducible Research in Computational Science

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21 January 2018

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7 January 2021

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Reproducibility.

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21 January 2018

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7 January 2021

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1,500 scientists lift the lid on reproducibility

2 references

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21 January 2018

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Quantifying reproducibility in computational biology: the case of the tuberculosis drugome

2 references

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21 January 2018

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The Mycobacterium tuberculosis drugome and its polypharmacological implications

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21 January 2018

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Repeatability of published microarray gene expression analyses

2 references

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21 January 2018

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Case studies in reproducibility.

2 references

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21 January 2018

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Open science and reproducible research

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Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

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21 January 2018

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Long-term reduction of T-cell intracellular antigens reveals a transcriptome associated with extracellular matrix and cell adhesion components

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Semi-supervised learning of the electronic health record for phenotype stratification

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

2 references

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Organoid models of human and mouse ductal pancreatic cancer

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Near-optimal probabilistic RNA-seq quantification

2 references

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21 January 2018

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limma powers differential expression analyses for RNA-sequencing and microarray studies

2 references

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21 January 2018

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Scalable and cost-effective NGS genotyping in the cloud

2 references

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21 January 2018

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7 January 2021

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Enhancing reproducibility for computational methods

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21 January 2018

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EMBOSS: the European Molecular Biology Open Software Suite

2 references

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21 January 2018

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Differential analysis of RNA-seq incorporating quantification uncertainty

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6103790

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

2 references

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26 November 2018

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Illuminating the black box

2 references

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21 January 2018

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7 January 2021

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Rebooting review

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7 January 2021

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Software with impact

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https://api.crossref.org/works/10.1038%2FNBT.3780

7 January 2021

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IPython: A System for Interactive Scientific Computing

1 reference

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7 January 2021

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Identifiers

10.1038/NBT.3780

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Springer Nature article ID

10.1038/nbt.3780

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