(Q38743889)

6 September 2017

title

Differential analysis of RNA-seq incorporating quantification uncertainty (English)

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6 September 2017

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Páll Melsted

4

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Lior Pachter

series ordinal

5

object named as

Lior Pachter

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6 September 2017

Harold Pimentel

1

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6 September 2017

Nicolas L Bray

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2

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6 September 2017

Suzette Puente

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3

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6 September 2017

publication date

5 June 2017

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6 September 2017

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6 September 2017

volume

14

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6 September 2017

issue

7

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6 September 2017

page(s)

687-690

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maintained by WikiProject

6 September 2017

WikiProject Software

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cites work

A survey of best practices for RNA-seq data analysis

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https://api.crossref.org/works/10.1038%2FNMETH.4324

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

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RNA-Seq gene expression estimation with read mapping uncertainty

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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Identifying differentially expressed transcripts from RNA-seq data with biological variation

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Differential expression analysis for sequence count data

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EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

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Moderated statistical tests for assessing differences in tag abundance

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https://api.crossref.org/works/10.1038%2FNMETH.4324

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4324

Near-optimal probabilistic RNA-seq quantification

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Flexible analysis of RNA-seq data using mixed effects models.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4324

Differential analysis of gene regulation at transcript resolution with RNA-seq

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4324

A benchmark for RNA-seq quantification pipelines

21 January 2018

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Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

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Transcriptome and genome sequencing uncovers functional variation in humans

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https://api.crossref.org/works/10.1038%2FNMETH.4324

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

21 January 2018

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HISAT: a fast spliced aligner with low memory requirements

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https://api.crossref.org/works/10.1038%2FNMETH.4324

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

21 January 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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Snakemake--a scalable bioinformatics workflow engine

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21 January 2018

Identifiers

DOI

10.1038/NMETH.4324

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Dimensions Publication ID

6 September 2017

1085864685

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