(Q39190922)

9 September 2017

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments (English)

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9 September 2017

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Christina Kendziorski

10

object named as

Christina Kendziorski

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author name string

Ning Leng

1

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9 September 2017

John A Dawson

2

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9 September 2017

James A Thomson

3

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9 September 2017

Victor Ruotti

4

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9 September 2017

Anna I Rissman

5

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9 September 2017

Bart M G Smits

6

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9 September 2017

Jill D Haag

7

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9 September 2017

Michael N Gould

8

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9 September 2017

Ron M Stewart

9

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9 September 2017

language of work or name

English

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publication date

21 February 2013

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9 September 2017

9

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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9 September 2017

29

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9 September 2017

8

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9 September 2017

1035-1043

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Creative Commons Attribution-NonCommercial 3.0 Unported

9 September 2017

start time

2 October 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Differential analysis of gene regulation at transcript resolution with RNA-seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Detecting differential usage of exons from RNA-seq data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Identifying differentially expressed transcripts from RNA-seq data with biological variation

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

IQSeq: integrated isoform quantification analysis based on next-generation sequencing

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Proteomic and phosphoproteomic comparison of human ES and iPS cells

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

A powerful and flexible approach to the analysis of RNA sequence count data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Estimation of alternative splicing isoform frequencies from RNA-Seq data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Analysis and design of RNA sequencing experiments for identifying isoform regulation

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Differential expression analysis for sequence count data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Towards reliable isoform quantification using RNA-SEQ data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

A scaling normalization method for differential expression analysis of RNA-seq data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

TopHat: discovering splice junctions with RNA-Seq

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Statistical inferences for isoform expression in RNA-Seq

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Alternative isoform regulation in human tissue transcriptomes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Moderated statistical tests for assessing differences in tag abundance

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Function of alternative splicing

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

Alternative splicing in the control of gene expression

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

The head-regeneration transcriptome of the planarian Schmidtea mediterranea.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

RNA-Seq gene expression estimation with read mapping uncertainty

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624807

10.1093/BIOINFORMATICS/BTT087

17 June 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LengDTRRSHGSK13

9 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 September 2017

PubMed publication ID

23428641

1 reference