Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q33876976)
Watch
English
Estimation of alternative splicing isoform frequencies from RNA-Seq data
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
title
Estimation of alternative splicing isoform frequencies from RNA-Seq data
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
main subject
RNA sequencing
1 reference
based on heuristic
inferred from title
alternative mRNA splicing, via spliceosome
1 reference
based on heuristic
inferred from title
RNA-Seq
1 reference
based on heuristic
inferred from title
author
Ion I. Mandoiu
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
Alexander Zelikovsky
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
author name string
Marius Nicolae
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
Serghei Mangul
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
publication date
19 April 2011
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
published in
Algorithms for Molecular Biology
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
volume
6
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
page(s)
9
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
copyright license
Creative Commons Attribution 2.0 Generic
start time
19 April 2011
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
1 reference
stated in
April 2022 Public Data File from Crossref
exact match
https://scigraph.springernature.com/pub.10.1186/1748-7188-6-9
0 references
cites work
Improving RNA-Seq expression estimates by correcting for fragment bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Alternative expression analysis by RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Transcribed dark matter: meaning or myth?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Optimization of de novo transcriptome assembly from next-generation sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Towards reliable isoform quantification using RNA-SEQ data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Biases in Illumina transcriptome sequencing caused by random hexamer priming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
RNA-Seq gene expression estimation with read mapping uncertainty
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
The completion of the Mammalian Gene Collection (MGC).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Identifiability of isoform deconvolution from junction arrays and RNA-Seq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Resolving deconvolution ambiguity in gene alternative splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
De novo transcriptome assembly with ABySS.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Transcript length bias in RNA-seq data confounds systems biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Continuous base identification for single-molecule nanopore DNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
TopHat: discovering splice junctions with RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Statistical inferences for isoform expression in RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Parallel short sequence assembly of transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Real-time DNA sequencing from single polymerase molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
RNA-Seq: a revolutionary tool for transcriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Alternative isoform regulation in human tissue transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
The transcriptional landscape of the mammalian genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107792
retrieved
5 July 2018
Identifiers
DOI
10.1186/1748-7188-6-9
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
DBLP publication ID
journals/almob/NicolaeMMZ11
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1035358650
1 reference
stated in
SciGraph
reference URL
https://scigraph.springernature.com/pub.10.1186/1748-7188-6-9
retrieved
9 September 2019
Internet Archive ID
pubmed-PMC3107792
0 references
PMCID
3107792
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
PubMed ID
21504602
1 reference
stated in
Europe PubMed Central
PMCID
3107792
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21504602%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
ResearchGate publication ID
51062254
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit