(Q29247998)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

title

Bacterial Topography of the Healthy Human Lower Respiratory Tract (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Gary B Huffnagle

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Jeffrey L. Curtis

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

author name string

John R Erb-Downward

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Christine M Freeman

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Lisa McCloskey

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

Nicole R Falkowski

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

publication date

14 February 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

volume

8

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

page(s)

e02287-16

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

issue

1

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

2 April 2020

ComplexHeatmap

object named as

ComplexHeatmap

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) study. Sarcoidosis protocol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Rationale and design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis. Alpha-1 protocol

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Analysis of the lung microbiome in the "healthy" smoker and in COPD

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Disordered microbial communities in asthmatic airways

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

The internal surface area of the adult human lung

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.

8 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Presence of Tropheryma whipplei in Different Body Sites in a Cohort of Healthy Subjects

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

The lung microbiome and exacerbations of COPD.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

The Microbiome and the Respiratory Tract

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

The Lung Microbiome: New Principles for Respiratory Bacteriology in Health and Disease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Application of a neutral community model to assess structuring of the human lung microbiome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Cell-associated bacteria in the human lung microbiome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

The role of the microbiome in exacerbations of chronic lung diseases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Conducting a microbiome study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Lung microbiome and disease progression in idiopathic pulmonary fibrosis: an analysis of the COMET study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Comparison of the respiratory microbiome in healthy nonsmokers and smokers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

The lung tissue microbiome in chronic obstructive pulmonary disease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Topographical continuity of bacterial populations in the healthy human respiratory tract

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Safety of investigative bronchoscopy in the Severe Asthma Research Program

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Bronchoscopic diagnosis of pulmonary infiltrates in granulocytopenic patients with hematologic malignancies: BAL versus PSB and PBAL.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Investigative bronchoprovocation and bronchoscopy in airway diseases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

A fiberoptic bronchoscopy technique to obtain uncontaminated lower airway secretions for bacterial culture

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Pharyngeal aspiration in normal adults and patients with depressed consciousness

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5312084

Epidemiology of ventilator-acquired pneumonia based on protected bronchoscopic sampling

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28196961

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Quantitative aspiration during sleep in normal subjects

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28196961

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/MBIO.02287-16

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28196961%20AND%20SRC:MED&resulttype=core&format=json

2 April 2020

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pmc&retmode=json&id=5312084

8 April 2017