(Q29542853)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

review article

1 reference

title

Investigating the mechanisms of photosynthetic proteins using continuum electrostatics (English)

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

1

1 reference

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7 January 2020

Eva-Maria Krammer

4

1 reference

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7 January 2020

author name string

Edda Kloppmann

2

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

Timm Essigke

3

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

Torsten Becker

6

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

Elisa Bombarda

7

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

Astrid R Klingen

5

1 reference

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7 January 2020

publication date

14 May 2008

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

published in

Photosynthesis Research

2 references

22 April 2017

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7 January 2020

volume

97

2 references

22 April 2017

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7 January 2020

issue

1

2 references

22 April 2017

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7 January 2020

page(s)

33-53

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

Electron transfers in chemistry and biology

7 January 2020

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11120-008-9306-1

Proton and electron transfer in bacterial reaction centers

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11120-008-9306-1

Influence of the membrane potential on the free energy of an intrinsic protein

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11120-008-9306-1

Electron and proton transfer to the quinones in bacterial photosynthetic reaction centers: insight from combined approaches of molecular genetics and biophysics

21 January 2018

1 reference

12 December 2020

Electrostatic orientation of the electron-transfer complex between plastocyanin and cytochrome c

1 reference

12 December 2020

Rieske protein from Thermus thermophilus: 15N NMR titration study demonstrates the role of iron-ligated histidines in the pH dependence of the reduction potential

1 reference

12 December 2020

Understanding the energetics of helical peptide orientation in membranes.

1 reference

12 December 2020

Formation and characterization of an all-ferrous Rieske cluster and stabilization of the [2Fe-2S]0 core by protonation

1 reference

12 December 2020

QM/MM studies of enzymes

1 reference

12 December 2020

Pathway of proton transfer in bacterial reaction centers: role of aspartate-L213 in proton transfers associated with reduction of quinoneto dihydroquinone

1 reference

12 December 2020

Variation of Ser-L223 hydrogen bonding with the QB redox state in reaction centers from Rhodobacter sphaeroides

1 reference

12 December 2020

Photosynthetic apparatus of purple bacteria

1 reference

12 December 2020

Alteration of the midpoint potential and catalytic activity of the rieske iron-sulfur protein by changes of amino acids forming hydrogen bonds to the iron-sulfur cluster

1 reference

12 December 2020

Brownian dynamics study of cytochrome f interactions with cytochrome c6 and plastocyanin in Chlamydomonas reinhardtii plastocyanin, and cytochrome c6 mutants

1 reference

12 December 2020

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

1 reference

12 December 2020

Electrostatics of nanosystems: application to microtubules and the ribosome

1 reference

12 December 2020

Energetics of electron-transfer and protonation reactions of the quinones in the photosynthetic reaction center of Rhodopseudomonas viridis.

1 reference

12 December 2020

Accelerated Poisson-Boltzmann calculations for static and dynamic systems

1 reference

12 December 2020

Calculation of electron transfer reorganization energies using the finite difference Poisson-Boltzmann model

1 reference

12 December 2020

pKa calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin

1 reference

12 December 2020

Influence of the membrane potential on the protonation of bacteriorhodopsin: insights from electrostatic calculations into the regulation of proton pumping.

1 reference

12 December 2020

Identification of the proton pathway in bacterial reaction centers: decrease of proton transfer rate by mutation of surface histidines at H126 and H128 and chemical rescue by imidazole identifies the initial proton donors

1 reference

12 December 2020

Quantum mechanical calculations on biological systems

1 reference

12 December 2020

Protein electron transfer rates set by the bridging secondary and tertiary structure

1 reference

12 December 2020

An extended dead-end elimination algorithm to determine gap-free lists of low energy states.

1 reference

12 December 2020

Negatively charged residues and hydrogen bonds tune the ligand histidine pKa values of Rieske iron-sulfur proteins

1 reference

12 December 2020

Electron transfer from the tetraheme cytochrome to the special pair in isolated reaction centers of Rhodopseudomonas viridis

1 reference

12 December 2020

pH modulates the quinone position in the photosynthetic reaction center from Rhodobacter sphaeroides in the neutral and charge separated states

1 reference

12 December 2020

Halorhodopsin and sensory rhodopsin contain a C6-C7 s-trans retinal chromophore

1 reference

12 December 2020

Electrostatic models for computing protonation and redox equilibria in proteins.

1 reference

12 December 2020

A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins

1 reference

12 December 2020

Complete Thermodynamic Characterization of Reduction and Protonation of thebc1-type Rieske [2Fe-2S] Center ofThermus thermophilus

1 reference

12 December 2020

Protein, lipid and water organization in bacteriorhodopsin crystals: a molecular view of the purple membrane at 1.9 A resolution

1 reference

12 December 2020

Structural alignment of ferredoxin and flavodoxin based on electrostatic potentials: implications for their interactions with photosystem I and ferredoxin-NADP reductase

1 reference

12 December 2020

X-ray structure of sensory rhodopsin II at 2.1-A resolution

1 reference

12 December 2020

Biomolecular diffusional association

1 reference

12 December 2020

Closing in on bacteriorhodopsin: progress in understanding the molecule

1 reference

12 December 2020

A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins.

1 reference

12 December 2020

Identification of the proton pathway in bacterial reaction centers: cooperation between Asp-M17 and Asp-L210 facilitates proton transfer to the secondary quinone (QB).

1 reference

12 December 2020

Interruption of the water chain in the reaction center from Rhodobacter sphaeroides reduces the rates of the proton uptake and of the second electron transfer to QB

1 reference

12 December 2020

Evidence for the archaebacterial-type conformation about the bond between the beta-ionone ring and the polyene chain of the chromophore retinal in chlamyrhodopsin

1 reference

12 December 2020

Areas, volumes, packing and protein structure

1 reference

12 December 2020

Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin

1 reference

12 December 2020

Proton and electron transfer in the acceptor quinone complex of Rhodobacter sphaeroides reaction centers: characterization of site-directed mutants of the two ionizable residues, GluL212 and AspL213, in the QB binding site

1 reference

12 December 2020

Effects of single and double mutations in plastocyanin on the rate constant and activation parameters for the rearrangement gating the electron-transfer reaction between the triplet state of zinc cytochrome c and cupriplastocyanin

1 reference

12 December 2020

Classical electrostatics in biology and chemistry

1 reference

12 December 2020

Environmental effects on the protonation states of active site residues in bacteriorhodopsin

1 reference

12 December 2020

Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.

1 reference

12 December 2020

Electrostatic potential at the retinal of three archaeal rhodopsins: implications for their different absorption spectra

1 reference

12 December 2020

Energetics of proton transfer pathways in reaction centers from Rhodobacter sphaeroides. The Glu-H173 activated mutants

1 reference

12 December 2020

Electrostatic effects on the kinetics of photoinduced electron-transfer reactions of the triplet state of zinc cytochrome c with wild-type and mutant forms of Pseudomonas aeruginosa azurin

1 reference

12 December 2020

A Brownian dynamics study of the effects of cytochrome f structure and deletion of its small domain in interactions with cytochrome c6 and plastocyanin in Chlamydomonas reinhardtii

1 reference

12 December 2020

Polarized FTIR spectroscopy in conjunction with in situ H/D exchange reveals the orientation of protein internal carboxylic acids

1 reference

12 December 2020

Electrostatic properties of cytochrome f: implications for docking with plastocyanin

1 reference

12 December 2020

Electron transfer between the quinones in the photosynthetic reaction center and its coupling to conformational changes.

1 reference

12 December 2020

Pathway of proton transfer in bacterial reaction centers: replacement of serine-L223 by alanine inhibits electron and proton transfers associated with reduction of quinone to dihydroquinone

1 reference

12 December 2020

Biomolecular modeling: Goals, problems, perspectives

1 reference

12 December 2020

Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides

1 reference

12 December 2020

Redox-linked protonation state changes in cytochrome bc1 identified by Poisson–Boltzmann electrostatics calculations

1 reference

12 December 2020

The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes

1 reference

12 December 2020

Complexes of photosynthetic redox proteins studied by NMR

1 reference

12 December 2020

The influence of a transmembrane pH gradient on protonation probabilities of bacteriorhodopsin: the structural basis of the back-pressure effect

1 reference

12 December 2020

A Brownian dynamics study of the interaction of Phormidium cytochrome f with various cyanobacterial plastocyanins

1 reference

12 December 2020

Protonation of Glu L212 following QB- formation in the photosynthetic reaction center of Rhodobacter sphaeroides: evidence from time-resolved infrared spectroscopy

1 reference

12 December 2020

Importance of protein rearrangement in the electron-transfer reaction between the physiological partners cytochrome f and plastocyanin

1 reference

12 December 2020

Modeling the effects of mutations on the free energy of the first electron transfer from QA- to QB in photosynthetic reaction centers

1 reference

12 December 2020

Proton and electron transfer to the secondary quinone (QB) in bacterial reaction centers: the effect of changing the electrostatics in the vicinity of QB by interchanging asp and glu at the L212 and L213 sites

1 reference

12 December 2020

Proton Affinity Changes Driving Unidirectional Proton Transport in the Bacteriorhodopsin Photocycle

1 reference

12 December 2020

Solid-state 13C NMR detection of a perturbed 6-s-trans chromophore in bacteriorhodopsin

1 reference

12 December 2020

Natural engineering principles of electron tunnelling in biological oxidation-reduction

1 reference

12 December 2020

The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics

1 reference

12 December 2020

Density functional calculation of p K(a) values and redox potentials in the bovine Rieske iron-sulfur protein

1 reference

12 December 2020

Effects of pH on protein association: modification of the proton-linkage model and experimental verification of the modified model in the case of cytochrome c and plastocyanin

1 reference

12 December 2020

Electrostatic coupling between retinal isomerization and the ionization state of Glu-204: a general mechanism for proton release in bacteriorhodopsin

1 reference

12 December 2020

Simulation of the electron transfer between the tetraheme subunit and the special pair of the photosynthetic reaction center using a microstate description

1 reference

12 December 2020

The position of QB in the photosynthetic reaction center depends on pH: a theoretical analysis of the proton uptake upon QB reduction

1 reference

12 December 2020

A Novel View of pH Titration in Biomolecules†

1 reference

12 December 2020

Light-induced structural changes in photosynthetic reaction center: implications for mechanism of electron-proton transfer

1 reference

12 December 2020

Calculated protein and proton motions coupled to electron transfer: electron transfer from QA- to QB in bacterial photosynthetic reaction centers.

1 reference

12 December 2020

Molecular mechanism of spectral tuning in sensory rhodopsin II.

1 reference

12 December 2020

In bacterial reaction centers rapid delivery of the second proton to QB can be achieved in the absence of L212Glu

1 reference

12 December 2020

Excitation migration in trimeric cyanobacterial photosystem I

1 reference

12 December 2020

Proton transfer pathways and mechanism in bacterial reaction centers

1 reference

12 December 2020

1 reference

12 December 2020

Simulating proton translocations in proteins: probing proton transfer pathways in the Rhodobacter sphaeroides reaction center

1 reference

12 December 2020

Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f.

1 reference

12 December 2020

Electron transfer between membrane complexes and soluble proteins in photosynthesis.

1 reference

12 December 2020

Implementation and testing of stable, fast implicit solvation in molecular dynamics using the smooth-permittivity finite difference Poisson-Boltzmann method

1 reference

12 December 2020

Calculation of proton transfers in Bacteriorhodopsin bR and M intermediates

1 reference

12 December 2020

Model for proton transport coupled to protein conformational change: application to proton pumping in the bacteriorhodopsin photocycle.

1 reference

12 December 2020

Nature of biological electron transfer

1 reference

12 December 2020

Crystal Structure of Sensory Rhodopsin II at 2.4 Angstroms: Insights into Color Tuning and Transducer Interaction

1 reference

12 December 2020

Calculating pKa values in enzyme active sites

1 reference

12 December 2020

Electron tunneling pathways in proteins: influences on the transfer rate

1 reference

12 December 2020

Intermolecular coulomb couplings from ab initio electrostatic potentials: application to optical transitions of strongly coupled pigments in photosynthetic antennae and reaction centers.

1 reference

12 December 2020

The alpha helix dipole: screened out?

1 reference

12 December 2020

Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin

1 reference

12 December 2020

How proteins trigger excitation energy transfer in the FMO complex of green sulfur bacteria

1 reference

12 December 2020

Comparing the rates and the activation parameters for the forward reaction between the triplet state of zinc cytochrome c and cupriplastocyanin and the back reaction between the zinc cytochrome c cation radical and cuproplastocyanin

1 reference

12 December 2020

Theoretical investigation of the behavior of titratable groups in proteins

1 reference

12 December 2020

Pathway of proton transfer in bacterial reaction centers: replacement of glutamic acid 212 in the L subunit by glutamine inhibits quinone (secondary acceptor) turnover

1 reference

12 December 2020

The quantum physics of photosynthesis

1 reference

12 December 2020

Structure of bacteriorhodopsin at 1.55 A resolution

1 reference

12 December 2020

Comparison of the physiologically equivalent proteins cytochrome c6 and plastocyanin on the basis of their electrostatic potentials. Tryptophan 63 in cytochrome c6 may be isofunctional with tyrosine 83 in plastocyanin.

1 reference

12 December 2020

10.1007/S11120-008-9306-1

Identifiers

DOI

2 references

22 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18478354%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 January 2020

1002908211

0 references

1 reference

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