(Q30155325)

English

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation (English)

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Pasteurella multocida

object named as

Pasteurella multocida

1 reference

based on heuristic

inferred from title

Richard Burchmore

2

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

author name string

Teerasak E-komon

1

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Pawel Herzyk

3

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Robert Davies

4

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

publication date

27 April 2012

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

13

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

63

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

A highly accurate statistical approach for the prediction of transmembrane beta-barrels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Outer membrane proteins of Pasteurella multocida.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae

1 reference

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3 June 2018

HHomp--prediction and classification of outer membrane proteins

1 reference

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3 June 2018

Membrane protein architects: the role of the BAM complex in outer membrane protein assembly.

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3 June 2018

Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome

1 reference

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3 June 2018

SOSUI-GramN: high performance prediction for sub-cellular localization of proteins in gram-negative bacteria.

1 reference

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3 June 2018

Improving subcellular localization prediction using text classification and the gene ontology

1 reference

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3 June 2018

A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles

1 reference

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3 June 2018

Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Functional discrimination of membrane proteins using machine learning techniques

1 reference

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3 June 2018

Pasteurella multocida and bovine respiratory disease

1 reference

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3 June 2018

Discrimination of outer membrane proteins with improved performance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Locating proteins in the cell using TargetP, SignalP and related tools

1 reference

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3 June 2018

Characterization of Francisella tularensis outer membrane proteins

1 reference

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3 June 2018

Pasteurella multocida pathogenesis: 125 years after Pasteur.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Sequence motifs and antimotifs in beta-barrel membrane proteins from a genome-wide analysis: the Ala-Tyr dichotomy and chaperone binding motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Methods for predicting bacterial protein subcellular localization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Predicting transmembrane beta-barrels and interstrand residue interactions from sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Prediction of protein subcellular localization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Analysis of the Pasteurella multocida outer membrane sub-proteome and its response to the in vivo environment of the natural host

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Advances in understanding bacterial outer-membrane biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Analysing the outer membrane subproteome of Methylococcus capsulatus (Bath) using proteomics and novel biocomputing tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Prediction of beta-barrel membrane proteins by searching for restricted domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

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GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

1 reference

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3 June 2018

The HHpred interactive server for protein homology detection and structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

Biogenesis of the Gram-negative bacterial outer membrane

1 reference

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3 June 2018

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria

1 reference

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Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations

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A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

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Prediction of lipoprotein signal peptides in Gram-negative bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

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MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

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The structure of bacterial outer membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

3 June 2018

The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403877

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Outer membrane proteins: key players for bacterial adaptation in host niches

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Complete genomic sequence of Pasteurella multocida, Pm70

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Influence of amino acid properties for discriminating outer membrane proteins at better accuracy.

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21 January 2018

Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition.

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21 January 2018

PSLpred: prediction of subcellular localization of bacterial proteins

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TMB finding pipeline: novel approach for detecting beta-barrel membrane proteins in genomic sequences.

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21 January 2018

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26 November 2018

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Motifs in outer membrane protein sequences: applications for discrimination

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12 December 2020

based on heuristic

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1 reference

https://pubmed.ncbi.nlm.nih.gov/22540951

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-13-63

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

DBLP publication ID

journals/bmcbi/E-komonBHD12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

ResearchGate publication ID

0 references

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