(Q30155389)

8 June 2017

BOCTOPUS: improved topology prediction of transmembrane β barrel proteins (English)

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8 June 2017

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transmembrane protein

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author

Sikander Hayat

series ordinal

1

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Arne Elofsson

object named as

Arne Elofsson

series ordinal

2

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language of work or name

English

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publication date

13 January 2012

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8 June 2017

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8 June 2017

28

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8 June 2017

4

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8 June 2017

516-522

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Scoring hidden Markov models to discriminate beta-barrel membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

A highly accurate statistical approach for the prediction of transmembrane beta-barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

beta-Barrel membrane bacterial proteins: structure, function, assembly and interaction with lipids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Discrimination of outer membrane proteins using machine learning algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

A rivet model for channel formation by aerolysin-like pore-forming toxins

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1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Improving the accuracy of transmembrane protein topology prediction using evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

OPM: orientations of proteins in membranes database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Prediction of beta-barrel membrane proteins by searching for restricted domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Computational identification of beta-barrel outer-membrane proteins in Mycobacterium tuberculosis predicted proteomes as putative vaccine candidates.

21 January 2018

1 reference

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Discrimination of outer membrane proteins using support vector machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

HHomp--prediction and classification of outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Redefining the goals of protein secondary structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

The structure of bacterial outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Architecture of beta-barrel membrane proteins: analysis of trimeric porins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

TMBHMM: a frequency profile based HMM for predicting the topology of transmembrane beta barrel proteins and the exposure status of transmembrane residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Outer membrane proteins can be simply identified using secondary structure element alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

Application of residue distribution along the sequence for discriminating outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR710

10.1093/BIOINFORMATICS/BTR710

21 January 2018

Identifiers

DOI

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journals/bioinformatics/HayatE12

8 June 2017

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DBLP Dataset 2021-01-02

28 January 2021

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PubMed ID

22247276