(Q30160020)

9 October 2017

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins (English)

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9 October 2017

1 reference

Piero Fariselli

1

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Rita Casadio

series ordinal

3

object named as

Rita Casadio

1 reference

9 October 2017

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Pier Luigi Martelli

2

1 reference

9 October 2017

1 December 2005

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9 October 2017

1 reference

9 October 2017

6 Suppl 4

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9 October 2017

S12

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-6-s4-s12

9 October 2017

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cites work

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

1 reference

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PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Transmembrane proteins in the Protein Data Bank: identification and classification.

3 June 2018

1 reference

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Predicting transmembrane beta-barrels in proteomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

A HMM-based method to predict the transmembrane regions of beta-barrel membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

A 3D model of the voltage-dependent anion channel (VDAC).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

The Pfam protein families database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

beta-Barrel membrane proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Dynamic programming alignment accuracy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Principles governing amino acid composition of integral membrane proteins: application to topology prediction

3 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Hidden Markov models of biological primary sequence information

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Hidden Markov models in computational biology. Applications to protein modeling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

In silico prediction of the structure of membrane proteins: is it feasible?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866396

10.1186/1471-2105-6-S4-S12

26 November 2018

Identifiers

DOI

1 reference

journals/bmcbi/FariselliMC05

9 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 October 2017

1 reference

PMCID

1866396