(Q30351880)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

Evolution of protein indels in plants, animals and fungi (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

author name string

Pravech Ajawatanawong

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

publication date

4 July 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

published in

BMC Evolutionary Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

page(s)

140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2148-13-140

4 March 2020

exact match

0 references

cites work

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1 reference

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Widespread recurrent evolution of genomic features

3 June 2018

1 reference

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IndelFR: a database of indels in protein structures and their flanking regions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

The genome portal of the Department of Energy Joint Genome Institute

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Evolution of elongation factor G and the origins of mitochondrial and chloroplast forms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Small insertions and deletions (INDELs) in human genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Systematic analysis of short internal indels and their impact on protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Impact of indels on the flanking regions in structural domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life

3 June 2018

1 reference

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Rare genomic changes and mitochondrial sequences provide independent support for congruent relationships among the sea spiders (Arthropoda, Pycnogonida).

3 June 2018

1 reference

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Scanning for the signatures of positive selection for human-specific insertions and deletions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

3 June 2018

1 reference

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3 June 2018

1 reference

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Assessing the root of bilaterian animals with scalable phylogenomic methods

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Indel PDB: a database of structural insertions and deletions derived from sequence alignments of closely related proteins

3 June 2018

1 reference

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Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Origins of human malaria: rare genomic changes and full mitochondrial genomes confirm the relationship of Plasmodium falciparum to other mammalian parasites but complicate the origins of Plasmodium vivax

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Phylogenomics and signature proteins for the alpha proteobacteria and its main groups

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Relationship between insertion/deletion (indel) frequency of proteins and essentiality

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Incorporating indel information into phylogeny estimation for rapidly emerging pathogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Long-term trends in evolution of indels in protein sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Indel-based targeting of essential proteins in human pathogens that have close host orthologue(s): discovery of selective inhibitors for Leishmania donovani elongation factor-1alpha

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Mechanism of a genetic glissando: structural biology of indel mutations.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Protein length in eukaryotic and prokaryotic proteomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Inparanoid: a comprehensive database of eukaryotic orthologs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

MUSCLE: multiple sequence alignment with high accuracy and high throughput

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

ArchDB: automated protein loop classification as a tool for structural genomics.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Positive selection on protein-length in the evolution of a primate sperm ion channel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Indels in protein-coding sequences of Euarchontoglires constrain the rooting of the eutherian tree.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

GapCoder automates the use of indel characters in phylogenetic analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Mutational equilibrium model of genome size evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Gaps as characters in sequence-based phylogenetic analyses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Rare genomic changes as a tool for phylogenetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

SINE insertions: powerful tools for molecular systematics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Twilight zone of protein sequence alignments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Empirical and structural models for insertions and deletions in the divergent evolution of proteins.

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

Lateral Transfer of an EF-1α Gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

Loops In Proteins (LIP)--a comprehensive loop database for homology modelling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

Is it better to add taxa or characters to a difficult phylogenetic problem?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

Large-Scale Parsimony Analysis of Metazoan Indels in Protein-Coding Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-13-140

The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Large-scale survey for potentially targetable indels in bacterial and protozoan proteins

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

Parabasalian flagellates are ancient eukaryotes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706215

The potential value of indels as phylogenetic markers: position of trichomonads as a case study

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23826714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The relative performance of indel-coding methods in simulations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23826714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of insertions/deletions in protein structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23826714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-13-140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 March 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-13-140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23826714%20AND%20SRC:MED&resulttype=core&format=json