(Q30353649)

13 September 2017

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL. (English)

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13 September 2017

1 reference

1

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Bohdan Monastyrskyy

series ordinal

2

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Krzysztof Fidelis

series ordinal

3

object named as

Krzysztof Fidelis

1 reference

13 September 2017

PMC publication ID

4396618

language of work or name

English

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publication date

18 October 2013

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13 September 2017

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13 September 2017

82 Suppl 2

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13 September 2017

7-13

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Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Assessment of protein disorder region predictions in CASP10

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Assessment of the assessment: evaluation of the model quality estimates in CASP10

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Evaluation of residue-residue contact prediction in CASP10

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

CAD-score: a new contact area difference-based function for evaluation of protein structural models.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

MolProbity: all-atom structure validation for macromolecular crystallography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Evaluation of template-based models in CASP8 with standard measures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Protein structure prediction center in CASP8.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Searching protein structure databases with DaliLite v.3

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

New tools and expanded data analysis capabilities at the Protein Structure Prediction Center

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

CASP6 data processing and automatic evaluation at the protein structure prediction center.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

The HHpred interactive server for protein homology detection and structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

LGA: A method for finding 3D similarities in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Processing and evaluation of predictions in CASP4

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396618

Evaluation of predictions in the CASP10 model refinement category.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24399

Definition and classification of evaluation units for CASP10

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24399

21 January 2018

Identifiers

DOI

10.1002/PROT.24399

1 reference

13 September 2017

1 reference

PMC publication ID

4396618

13 September 2017

PubMed publication ID

24038551

1 reference

PMC publication ID

4396618