(Q30356675)

21 August 2017

The expanded FindCore method for identification of a core atom set for assessment of protein structure prediction. (English)

1 reference

protein structure prediction

21 August 2017

0 references

author

Gaetano T. Montelione

5

object named as

Gaetano T Montelione

1 reference

21 August 2017

David A Snyder

1

1 reference

21 August 2017

Jennifer Grullon

2

1 reference

21 August 2017

Yuanpeng J Huang

3

1 reference

21 August 2017

Roberto Tejero

4

1 reference

21 August 2017

language of work or name

English

0 references

publication date

1 February 2014

1 reference

21 August 2017

1 reference

21 August 2017

82 Suppl 2

1 reference

21 August 2017

219-230

1 reference

Quality assessment of protein NMR structures.

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Recommendations of the wwPDB NMR Validation Task Force

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

PDBStat: a universal restraint converter and restraint analysis software package for protein NMR

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Critical assessment of methods of protein structure prediction (CASP)--round IX

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

CASP9 target classification

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Improved technologies now routinely provide protein NMR structures useful for molecular replacement

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Objective identification of residue ranges for the superposition of protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Assessment of CASP7 predictions in the high accuracy template-based modeling category

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Evaluating protein structures determined by structural genomics consortia

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Empirical Bayes hierarchical models for regularizing maximum likelihood estimation in the matrix Gaussian Procrustes problem

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

ARIA2: automated NOE assignment and data integration in NMR structure calculation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

LGA: A method for finding 3D similarities in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Processing and evaluation of predictions in CASP4

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Processing and analysis of CASP3 protein structure predictions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Equilibrium NMR studies of unfolded and partially folded proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

An automated approach for defining core atoms and domains in an ensemble of NMR-derived protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

Simulated annealing with restrained molecular dynamics using CONGEN: energy refinement of the NMR solution structures of epidermal and type-alpha transforming growth factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

A large-scale experiment to assess protein structure prediction methods.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

The solution structure of eglin c based on measurements of many NOEs and coupling constants and its comparison with X‐ray structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3932188

PROCHECK: a program to check the stereochemical quality of protein structures

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24490

Inferential structure determination.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24490

ISD: a software package for Bayesian NMR structure calculation.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPROT.24490

21 January 2018

Identifiers

DOI

10.1002/PROT.24490

1 reference

21 August 2017

1 reference

21 August 2017

PubMed publication ID

24327305

1 reference