(Q30359369)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Automatic classification of protein structures using low-dimensional structure space mappings (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

author name string

Rahul Singh

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

publication date

24 January 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

volume

15 Suppl 2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

page(s)

S1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

The impact of structural diversity and parameterization on maps of the protein universe

8 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Towards human-computer synergetic analysis of large-scale biological data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Maps of protein structure space reveal a fundamental relationship between protein structure and function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Touring protein space with Matt

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Pre-calculated protein structure alignments at the RCSB PDB website

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

PDBselect 1992-2009 and PDBfilter-select

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

ColorTree: a batch customization tool for phylogenic trees

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Towards an automatic classification of protein structural domains based on structural similarity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Matt: local flexibility aids protein multiple structure alignment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Data growth and its impact on the SCOP database: new developments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Global mapping of the protein structure space and application in structure-based inference of protein function.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Database searching by flexible protein structure alignment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Flexible structure alignment by chaining aligned fragment pairs allowing twists

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

The CATH Database provides insights into protein structure/function relationships.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Dictionary of recurrent domains in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Touring protein fold space with Dali/FSSP

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Mapping the protein universe

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Dali: a network tool for protein structure comparison

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Identification and classification of protein fold families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

Crosstalk between T lymphocytes and dendritic cells

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

High-affinity T helper epitope induces complementary helper and APC polarization, increased CTL, and protection against viral infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Immuno-informatics: Mining genomes for vaccine components

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Thyrotropin receptor epitopes and their relation to histocompatibility leukocyte antigen-DR molecules in Graves' disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

An interactive Web site providing major histocompatibility ligand predictions: application to HIV research

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

An HLA-directed molecular and bioinformatics approach identifies new HLA-A11 HIV-1 subtype E cytotoxic T lymphocyte epitopes in HIV-1-infected Thais.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Analyzing Mycobacterium tuberculosis proteomes for candidate vaccine epitopes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Coupling sensitive in vitro and in silico techniques to assess cross-reactive CD4(+) T cells against the swine-origin H1N1 influenza virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Bacteria modulate the CD8+ T cell epitope repertoire of host cytosol-exposed proteins to manipulate the host immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Natural versus adaptive regulatory T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

T cell receptor crossreactivity as a general property of T cell recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

T-cell antigen receptor genes and T-cell recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Control of central self-tolerance induction by autoreactive CD4+ thymocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

T-cells behaving badly: structural insights into alloreactivity and autoimmunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

The two-faced T cell epitope: examining the host-microbe interface with JanusMatrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Two novel T cell epitope prediction algorithms based on MHC-binding motifs; comparison of predicted and published epitopes from Mycobacterium tuberculosis and HIV protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Influenza M2 proton channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Evolutionary deimmunization: An ancillary mechanism for self-tolerance?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S4-S1

Quantifying the similarities within fold space

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4016610

10.1186/1471-2105-15-S2-S1

26 November 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/AsarnowS14

8 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24564500%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

24564500

1 reference