(Q30360192)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

A knot in the protein structure - probing the near-infrared fluorescent protein iRFP designed from a bacterial phytochrome (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Konstantin K. Turoverov

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Irina M Kuznetsova

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Vladislav V Verkhusha

5

object named as

Vladislav V Verkhusha

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

3

Olga V Stepanenko

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1

Olesya V Stepanenko

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Daria M Shcherbakova

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

language of work or name

English

0 references

publication date

1 April 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

281

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

2284-2298

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

Multicontrast photoacoustic in vivo imaging using near-infrared fluorescent proteins

10 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

A near-infrared BiFC reporter for in vivo imaging of protein-protein interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Far-red light photoactivatable near-infrared fluorescent proteins engineered from a bacterial phytochrome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Near-infrared fluorescent proteins for multicolor in vivo imaging

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Knotting pathways in proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Single-molecule detection reveals knot sliding in TrmD denaturation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Engineering of bacterial phytochromes for near-infrared imaging, sensing, and light-control in mammals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Beta-barrel scaffold of fluorescent proteins: folding, stability and role in chromophore formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Distinct effects of guanidine thiocyanate on the structure of superfolder GFP.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Energy landscape of knotted protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Reevaluation of ANS binding to human and bovine serum albumins: key role of equilibrium microdialysis in ligand - receptor binding characterization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Conservation of complex knotting and slipknotting patterns in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Bright and stable near-infrared fluorescent protein for in vivo imaging

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Structures and folding pathways of topologically knotted proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Bacterial phytochromes: more than meets the light

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Differences in the pathways of proteins unfolding induced by urea and guanidine hydrochloride: molten globule state and aggregates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Structural classification of proteins and structural genomics: new insights into protein folding and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Slipknotting upon native-like loop formation in a trefoil knot protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Bathy phytochromes in rhizobial soil bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Experimental detection of knotted conformations in denatured proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

A Stevedore's protein knot

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

A brief history of phytochromes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The protein kingdom extended: ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Gene silencing in the marine diatom Phaeodactylum tricornutum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Tightening the knot in phytochrome by single-molecule atomic force microscopy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Dodging the crisis of folding proteins with knots

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Sequence-specific size, structure, and stability of tight protein knots

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Exploring knotting mechanisms in protein folding.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The fungal phytochrome FphA from Aspergillus nidulans.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The structure of a complete phytochrome sensory module in the Pr ground state

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Solution structure of the U2 snRNP protein Rds3p reveals a knotted zinc-finger motif

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

pKNOT: the protein KNOT web server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Protein knots and fold complexity: some new twists.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Intricate knots in proteins: Function and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Rapid knot detection and application to protein structure prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Probing nature's knots: the folding pathway of a knotted homodimeric protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Statistics of knots, geometry of conformations, and evolution of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

DETECTION, ASSAY, AND PRELIMINARY PURIFICATION OF THE PIGMENT CONTROLLING PHOTORESPONSIVE DEVELOPMENT OF PLANTS.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Theory of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The structure of the RlmB 23S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Phytochrome ancestry: sensors of bilins and light.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

An enzyme with a deep trefoil knot for the active-site architecture

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

A deeply knotted protein structure and how it might fold.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Phycocyanobilin is the natural precursor of the phytochrome chromophore in the green alga Mesotaenium caldariorum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

A prokaryotic phytochrome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Preparation and properties of crystalline biliverdin IX alpha. Simple methods for preparing isomerically homogeneous biliverdin and [14C[biliverdin by using 2,3-dichloro-5,6-dicyanobenzoquinone

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The Optical Activity of Nucleic Acids and their Aggregates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Topology of globular proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Structure of Yeast Phosphoglycerate Kinase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The environment of the tryptophan residue in Pseudomonas aeruginosa azurin and its fluorescence properties.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

β-Sheet topology and the relatedness of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

The Aspergillus nidulans phytochrome FphA represses sexual development in red light

3 June 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Are there knots in proteins?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Contribution of separate tryptophan residues to intrinsic fluorescence of actin. Analysis of 3D structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Binding stoichiometry and affinity of fluorescent dyes to proteins in different structural states

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

A comparison of the folding of two knotted proteins: YbeA and YibK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Folding studies on a knotted protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Chromophore packing leads to hysteresis in GFP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Fluorescence properties of glutamine-binding protein from Escherichia coli and its complex with glutamine

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Highly UV-absorbing complex in selenomethionine-substituted alcohol dehydrogenase from Sulfolobus solfataricus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Conformational change of the dimeric DsbC molecule induced by GdnHCl. A study by intrinsic fluorescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Interaction of Thioflavin T with Amyloid Fibrils: Stoichiometry and Affinity of Dye Binding, Absorption Spectra of Bound Dye

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Intrinsic Fluorescence of Actin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.12781

Data Deposition and Annotation at the Worldwide Protein Data Bank

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4009348

Knot formation in newly translated proteins is spontaneous and accelerated by chaperonins

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24628916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[A complex of apparatus and programs for the measurement of spectral, polarization and kinetic characteristics of fluorescence in solution]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24628916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Translocation of a knotted polypeptide through a pore

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24628916

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1111/FEBS.12781

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24628916%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

24628916

1 reference