(Q30371365)

17 October 2017

Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase (English)

1 reference

proton-coupled electron transfer

17 October 2017

1 reference

3

1 reference

17 October 2017

4

1 reference

17 October 2017

Vivek Sharma

1

0 references

Giray Enkavi

series ordinal

2

object named as

Giray Enkavi

1 reference

17 October 2017

5

Mårten Wikström

1 reference

PMC publication ID

4343153

17 October 2017

language of work or name

English

0 references

publication date

2 February 2015

1 reference

Proceedings of the National Academy of Sciences of the United States of America

17 October 2017

1 reference

17 October 2017

112

1 reference

17 October 2017

7

1 reference

17 October 2017

2040-2045

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

17 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Computational study of the activated O(H) state in the catalytic mechanism of cytochrome c oxidase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Coupled electron and proton transfer reactions during the O→E transition in bovine cytochrome c oxidase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Active site intermediates in the reduction of O(2) by cytochrome oxidase, and their derivatives

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The mechanism for proton pumping in cytochrome c oxidase from an electrostatic and quantum chemical perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Proton-pumping mechanism of cytochrome c oxidase: a kinetic master-equation approach

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Cytochrome c oxidase: Intermediates of the catalytic cycle and their energy-coupled interconversion

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome C oxidase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Proton transfer via a transient linear water-molecule chain in a membrane protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Water molecule reorganization in cytochrome c oxidase revealed by FTIR spectroscopy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Proton-coupled electron transfer in cytochrome oxidase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Theory of coupled electron and proton transfer reactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The protonation state of the cross-linked tyrosine during the catalytic cycle of cytochrome c oxidase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Glutamic acid 242 is a valve in the proton pump of cytochrome c oxidase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Nanosecond electron tunneling between the hemes in cytochrome bo3

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Mechanism and energetics of proton translocation by the respiratory heme-copper oxidases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

On the nature of hydrogen bonds: an overview on computational studies and a word about patterns.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Exploring the proton pump mechanism of cytochrome c oxidase in real time

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Proton-coupled electron transfer drives the proton pump of cytochrome c oxidase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Scalable molecular dynamics with NAMD

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Gating of proton and water transfer in the respiratory enzyme cytochrome c oxidase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Water molecules and hydrogen-bonded networks in bacteriorhodopsin--molecular dynamics simulations of the ground state and the M-intermediate

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

A discrete water exit pathway in the membrane protein cytochrome c oxidase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The hydrogen bond in the solid state

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

A novel scenario for the evolution of haem-copper oxygen reductases.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The role of the D- and K-pathways of proton transfer in the function of the haem-copper oxidases.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The roles of the two proton input channels in cytochrome c oxidase from Rhodobacter sphaeroides probed by the effects of site-directed mutations on time-resolved electrogenic intraprotein proton transfer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

VMD: visual molecular dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Proton pump coupled to cytochrome c oxidase in mitochondria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4343153

Water-gated mechanism of proton translocation by cytochrome c oxidase

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409543112

The identity of the transient proton loading site of the proton-pumping mechanism of cytochrome c oxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409543112

Exploring the possible role of Glu286 in CcO by electrostatic energy computations combined with molecular dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409543112

Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409543112

Bound water in the proton translocation mechanism of the haem-copper oxidases

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409543112

Dynamics of the glutamic acid 242 side chain in cytochrome c oxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1409543112

Dynamic water networks in cytochrome cbb3 oxidase

21 January 2018

1 reference

12 December 2020

Charge parameterization of the metal centers in cytochromecoxidase

1 reference

12 December 2020

The K-pathway revisited: a computational study on cytochrome c oxidase

1 reference

12 December 2020

Energy diagrams and mechanism for proton pumping in cytochrome c oxidase

1 reference

12 December 2020

Heme/Copper Terminal Oxidases

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1409543112

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/2hqzl4zqirhq5dcfbofmo3bmlu

30 July 2022

release_2hqzl4zqirhq5dcfbofmo3bmlu

ADS bibcode

2015PNAS..112.2040S

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/2hqzl4zqirhq5dcfbofmo3bmlu

30 July 2022

https://api.fatcat.wiki/v0/release/2hqzl4zqirhq5dcfbofmo3bmlu

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/2hqzl4zqirhq5dcfbofmo3bmlu

PubMed publication ID

1 reference

30 July 2022