(Q35079430)

6 August 2017

title

Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome C oxidase (English)

1 reference

6 August 2017

Shuo Yang

1

1 reference

6 August 2017

Qiang Cui

series ordinal

2

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6 August 2017

language of work or name

English

0 references

publication date

1 July 2011

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6 August 2017

number of pages

9

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inferred from page(s)

published in

Biophysical Journal

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6 August 2017

volume

101

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6 August 2017

issue

1

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6 August 2017

page(s)

61-69

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

6 August 2017

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8 July 2018

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8 July 2018

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Intricate Role of Water in Proton Transport through Cytochrome c Oxidase

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Kinetic gating of the proton pump in cytochrome c oxidase

8 July 2018

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Properties of Arg481 mutants of the aa3-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that neither R481 nor the nearby D-propionate of heme a3 is likely to be the proton loading site of the proton pump

8 July 2018

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8 July 2018

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8 July 2018

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Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase.

8 July 2018

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Glutamic acid 242 is a valve in the proton pump of cytochrome c oxidase.

8 July 2018

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Storage of an excess proton in the hydrogen-bonded network of the d-pathway of cytochrome C oxidase: identification of a protonated water cluster

8 July 2018

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8 July 2018

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Calculated proton uptake on anaerobic reduction of cytochrome C oxidase: is the reaction electroneutral?

8 July 2018

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The barrier for proton transport in aquaporins as a challenge for electrostatic models: the role of protein relaxation in mutational calculations

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides

8 July 2018

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8 July 2018

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The identity of the transient proton loading site of the proton-pumping mechanism of cytochrome c oxidase

27 September 2018

1 reference

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Mechanism and energetics by which glutamic acid 242 prevents leaks in cytochrome c oxidase.

27 September 2018

1 reference

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Microscopic pKa analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): toward a calibrated molecular model

27 September 2018

1 reference

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Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor

27 September 2018

1 reference

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Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction

27 September 2018

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On the convergence improvement in the metadynamics simulations: a Wang-Landau recursion approach.

27 September 2018

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pKa calculations in solution and proteins with QM/MM free energy perturbation simulations: a quantitative test of QM/MM protocols.

27 September 2018

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27 September 2018

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Grand canonical Monte Carlo simulations of water in protein environments.

27 September 2018

1 reference

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Proton pumping mechanism and catalytic cycle of cytochrome c oxidase: Coulomb pump model with kinetic gating

27 September 2018

1 reference

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Electrostatic study of the proton pumping mechanism in bovine heart cytochrome C oxidase

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127198

Water-gated mechanism of proton translocation by cytochrome c oxidase

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127198

Dynamics of the glutamic acid 242 side chain in cytochrome c oxidase

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127198

Charge parameterization of the metal centers in cytochromecoxidase

9 December 2018

1 reference

12 December 2020

SCC-DFTB: what is the proper degree of self-consistency?

1 reference

12 December 2020

pKa analysis for the zinc-bound water in human carbonic anhydrase II: Benchmark for "multiscale" QM/MM simulations and mechanistic implications

1 reference

12 December 2020

Energy diagrams and mechanism for proton pumping in cytochrome c oxidase

1 reference

12 December 2020

10.1016/J.BPJ.2011.05.004

Identifiers

DOI

1 reference

6 August 2017

1 reference

6 August 2017

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