(Q30374428)

21 June 2017

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title

Probabilistic models and machine learning in structural bioinformatics. (English)

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21 June 2017

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probabilistic modeling

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1

Thomas Hamelryck

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21 June 2017

publication date

19 January 2009

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Statistical Methods in Medical Research

21 June 2017

published in

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21 June 2017

volume

18

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21 June 2017

issue

5

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21 June 2017

page(s)

505-526

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Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

21 June 2017

cites work

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https://api.crossref.org/works/10.1177%2F0962280208099492

Automated de novo prediction of native-like RNA tertiary structures

21 January 2018

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De novo computational design of retro-aldol enzymes

21 January 2018

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The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

21 January 2018

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Assessment of CASP7 structure predictions for template free targets

21 January 2018

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Molecular dynamics simulations of biomolecules

21 January 2018

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Information Theory and Statistical Mechanics

21 January 2018

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Information Theory and Statistical Mechanics. II

21 January 2018

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Principles that govern the folding of protein chains

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Interfaces and the driving force of hydrophobic assembly

21 January 2018

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Non–coding RNA genes and the modern RNA world

21 January 2018

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Protein bioinformatics and mixtures of bivariate von Mises distributions for angular data

21 January 2018

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An Antipodally Symmetric Distribution on the Sphere

21 January 2018

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On the statistical analysis of orientation data

21 January 2018

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Factor graphs and the sum-product algorithm

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

21 January 2018

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Local sequence-structure correlations in proteins

21 January 2018

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Shaping up the protein folding funnel by local interaction: lesson from a structure prediction study

21 January 2018

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Sampling realistic protein conformations using local structural bias

21 January 2018

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A simplified representation of protein conformations for rapid simulation of protein folding

21 January 2018

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A number of real-space torsion-angle refinement techniques for proteins, nucleic acids, ligands and solvent.

21 January 2018

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Stereochemistry of polypeptide chain configurations

21 January 2018

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A generative, probabilistic model of local protein structure

21 January 2018

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Funnel sculpting for in silico assembly of secondary structure elements of proteins

21 January 2018

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How to derive a protein folding potential? A new approach to an old problem

21 January 2018

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A new pairwise folding potential based on improved decoy generation and side-chain packing.

21 January 2018

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Spin glasses and the statistical mechanics of protein folding

21 January 2018

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Teaching computers to fold proteins

21 January 2018

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Learning about protein hydrogen bonding by minimizing contrastive divergence.

21 January 2018

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Training products of experts by minimizing contrastive divergence

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Development of novel statistical potentials for protein fold recognition

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Statistical potentials extracted from protein structures: how accurate are they?

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Comparison of database potentials and molecular mechanics force fields

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Free energy estimates of all-atom protein structures using generalized belief propagation.

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

A solution for the best rotation to relate two sets of vectors

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

The mle algorithm for the matrix normal distribution

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Bayesian refinement of protein functional site matching

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

The Poisson Index: a new probabilistic model for protein ligand binding site similarity.

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Inferential structure determination.

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Bayesian inference applied to macromolecular structure determination

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Weighting of experimental evidence in macromolecular structure determination

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

New applications of maximum likelihood and Bayesian statistics in macromolecular crystallography

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Small-angle scattering studies of biological macromolecules in solution

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

Addition of missing loops and domains to protein models by x-ray solution scattering

21 January 2018

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https://api.crossref.org/works/10.1177%2F0962280208099492

21 January 2018

Identifiers

DOI

10.1177/0962280208099492

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21 June 2017

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